Experiment: soil sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17420 and PS417_17425 overlap by 11 nucleotides PS417_17425 and PS417_17430 are separated by 107 nucleotides PS417_17430 and PS417_17435 are separated by 121 nucleotides
PS417_17420: PS417_17420 - ethanol oxidation regulatory protein ercA (from data) , at 3,805,701 to 3,806,864
_17420
PS417_17425: PS417_17425 - hypothetical protein, at 3,806,854 to 3,807,150
_17425
PS417_17430: PS417_17430 - aldehyde dehydrogenase, at 3,807,258 to 3,808,778
_17430
PS417_17435: PS417_17435 - dehydrogenase, at 3,808,900 to 3,810,675
_17435
Position (kb)
3807
3808
3809 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3806.358 kb on - strand at 3806.603 kb on - strand, within PS417_17420 at 3806.668 kb on + strand, within PS417_17420 at 3806.668 kb on - strand, within PS417_17420 at 3806.779 kb on + strand at 3806.780 kb on - strand at 3806.841 kb on + strand at 3806.841 kb on + strand at 3806.841 kb on + strand at 3806.842 kb on - strand at 3806.881 kb on - strand at 3806.891 kb on + strand, within PS417_17425 at 3806.891 kb on + strand, within PS417_17425 at 3806.907 kb on + strand, within PS417_17425 at 3807.008 kb on - strand, within PS417_17425 at 3807.008 kb on - strand, within PS417_17425 at 3807.008 kb on - strand, within PS417_17425 at 3807.062 kb on + strand, within PS417_17425 at 3807.108 kb on - strand, within PS417_17425 at 3807.148 kb on + strand at 3807.149 kb on - strand at 3807.259 kb on + strand at 3807.628 kb on + strand, within PS417_17430 at 3807.628 kb on + strand at 3807.628 kb on + strand, within PS417_17430 at 3807.629 kb on - strand, within PS417_17430 at 3807.629 kb on - strand, within PS417_17430 at 3807.716 kb on - strand, within PS417_17430 at 3807.839 kb on - strand, within PS417_17430 at 3808.400 kb on - strand, within PS417_17430 at 3808.675 kb on + strand at 3808.714 kb on + strand at 3808.715 kb on - strand at 3808.715 kb on - strand at 3808.715 kb on - strand at 3808.718 kb on + strand at 3808.719 kb on - strand at 3808.771 kb on + strand at 3808.772 kb on - strand at 3808.834 kb on + strand at 3808.835 kb on - strand at 3808.835 kb on - strand at 3808.835 kb on - strand at 3808.895 kb on + strand at 3809.037 kb on - strand at 3809.273 kb on + strand, within PS417_17435 at 3809.273 kb on + strand, within PS417_17435 at 3809.274 kb on - strand, within PS417_17435 at 3809.334 kb on - strand, within PS417_17435 at 3809.408 kb on + strand, within PS417_17435 at 3809.408 kb on + strand, within PS417_17435 at 3809.409 kb on - strand, within PS417_17435 at 3809.672 kb on + strand, within PS417_17435 at 3809.706 kb on - strand, within PS417_17435
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB remove 3,806,358 - +0.9 3,806,603 - PS417_17420 0.77 -0.3 3,806,668 + PS417_17420 0.83 +0.6 3,806,668 - PS417_17420 0.83 -0.4 3,806,779 + -3.1 3,806,780 - -0.8 3,806,841 + -0.1 3,806,841 + +0.2 3,806,841 + +1.1 3,806,842 - -0.2 3,806,881 - -0.1 3,806,891 + PS417_17425 0.12 -0.6 3,806,891 + PS417_17425 0.12 -0.2 3,806,907 + PS417_17425 0.18 -0.9 3,807,008 - PS417_17425 0.52 -2.3 3,807,008 - PS417_17425 0.52 +0.3 3,807,008 - PS417_17425 0.52 -1.7 3,807,062 + PS417_17425 0.70 -2.7 3,807,108 - PS417_17425 0.86 +0.9 3,807,148 + +2.9 3,807,149 - +1.4 3,807,259 + -0.5 3,807,628 + PS417_17430 0.24 +0.4 3,807,628 + +0.7 3,807,628 + PS417_17430 0.24 -0.7 3,807,629 - PS417_17430 0.24 -0.0 3,807,629 - PS417_17430 0.24 -0.3 3,807,716 - PS417_17430 0.30 -0.1 3,807,839 - PS417_17430 0.38 +1.5 3,808,400 - PS417_17430 0.75 +0.6 3,808,675 + -0.1 3,808,714 + -0.3 3,808,715 - +0.8 3,808,715 - +0.1 3,808,715 - +0.0 3,808,718 + +0.6 3,808,719 - -1.4 3,808,771 + -2.9 3,808,772 - -0.3 3,808,834 + +0.2 3,808,835 - +0.7 3,808,835 - +1.8 3,808,835 - -0.5 3,808,895 + +0.3 3,809,037 - -1.4 3,809,273 + PS417_17435 0.21 -0.1 3,809,273 + PS417_17435 0.21 -0.3 3,809,274 - PS417_17435 0.21 -1.8 3,809,334 - PS417_17435 0.24 -0.5 3,809,408 + PS417_17435 0.29 +0.1 3,809,408 + PS417_17435 0.29 +1.8 3,809,409 - PS417_17435 0.29 +0.3 3,809,672 + PS417_17435 0.43 -1.2 3,809,706 - PS417_17435 0.45 -1.3
Or see this region's nucleotide sequence