Strain Fitness in Pseudomonas simiae WCS417 around PS417_17430

Experiment: soil sample 4; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_17420 and PS417_17425 overlap by 11 nucleotidesPS417_17425 and PS417_17430 are separated by 107 nucleotidesPS417_17430 and PS417_17435 are separated by 121 nucleotides PS417_17420: PS417_17420 - ethanol oxidation regulatory protein ercA (from data), at 3,805,701 to 3,806,864 _17420 PS417_17425: PS417_17425 - hypothetical protein, at 3,806,854 to 3,807,150 _17425 PS417_17430: PS417_17430 - aldehyde dehydrogenase, at 3,807,258 to 3,808,778 _17430 PS417_17435: PS417_17435 - dehydrogenase, at 3,808,900 to 3,810,675 _17435 Position (kb) 3807 3808 3809Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3806.358 kb on - strandat 3806.603 kb on - strand, within PS417_17420at 3806.668 kb on + strand, within PS417_17420at 3806.668 kb on - strand, within PS417_17420at 3806.779 kb on + strandat 3806.780 kb on - strandat 3806.841 kb on + strandat 3806.841 kb on + strandat 3806.841 kb on + strandat 3806.842 kb on - strandat 3806.881 kb on - strandat 3806.891 kb on + strand, within PS417_17425at 3806.891 kb on + strand, within PS417_17425at 3806.907 kb on + strand, within PS417_17425at 3807.008 kb on - strand, within PS417_17425at 3807.008 kb on - strand, within PS417_17425at 3807.008 kb on - strand, within PS417_17425at 3807.062 kb on + strand, within PS417_17425at 3807.108 kb on - strand, within PS417_17425at 3807.148 kb on + strandat 3807.149 kb on - strandat 3807.259 kb on + strandat 3807.628 kb on + strand, within PS417_17430at 3807.628 kb on + strandat 3807.628 kb on + strand, within PS417_17430at 3807.629 kb on - strand, within PS417_17430at 3807.629 kb on - strand, within PS417_17430at 3807.716 kb on - strand, within PS417_17430at 3807.839 kb on - strand, within PS417_17430at 3808.400 kb on - strand, within PS417_17430at 3808.675 kb on + strandat 3808.714 kb on + strandat 3808.715 kb on - strandat 3808.715 kb on - strandat 3808.715 kb on - strandat 3808.718 kb on + strandat 3808.719 kb on - strandat 3808.771 kb on + strandat 3808.772 kb on - strandat 3808.834 kb on + strandat 3808.835 kb on - strandat 3808.835 kb on - strandat 3808.835 kb on - strandat 3808.895 kb on + strandat 3809.037 kb on - strandat 3809.273 kb on + strand, within PS417_17435at 3809.273 kb on + strand, within PS417_17435at 3809.274 kb on - strand, within PS417_17435at 3809.334 kb on - strand, within PS417_17435at 3809.408 kb on + strand, within PS417_17435at 3809.408 kb on + strand, within PS417_17435at 3809.409 kb on - strand, within PS417_17435at 3809.672 kb on + strand, within PS417_17435at 3809.706 kb on - strand, within PS417_17435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB
remove
3,806,358 - +0.9
3,806,603 - PS417_17420 0.77 -0.3
3,806,668 + PS417_17420 0.83 +0.6
3,806,668 - PS417_17420 0.83 -0.4
3,806,779 + -3.1
3,806,780 - -0.8
3,806,841 + -0.1
3,806,841 + +0.2
3,806,841 + +1.1
3,806,842 - -0.2
3,806,881 - -0.1
3,806,891 + PS417_17425 0.12 -0.6
3,806,891 + PS417_17425 0.12 -0.2
3,806,907 + PS417_17425 0.18 -0.9
3,807,008 - PS417_17425 0.52 -2.3
3,807,008 - PS417_17425 0.52 +0.3
3,807,008 - PS417_17425 0.52 -1.7
3,807,062 + PS417_17425 0.70 -2.7
3,807,108 - PS417_17425 0.86 +0.9
3,807,148 + +2.9
3,807,149 - +1.4
3,807,259 + -0.5
3,807,628 + PS417_17430 0.24 +0.4
3,807,628 + +0.7
3,807,628 + PS417_17430 0.24 -0.7
3,807,629 - PS417_17430 0.24 -0.0
3,807,629 - PS417_17430 0.24 -0.3
3,807,716 - PS417_17430 0.30 -0.1
3,807,839 - PS417_17430 0.38 +1.5
3,808,400 - PS417_17430 0.75 +0.6
3,808,675 + -0.1
3,808,714 + -0.3
3,808,715 - +0.8
3,808,715 - +0.1
3,808,715 - +0.0
3,808,718 + +0.6
3,808,719 - -1.4
3,808,771 + -2.9
3,808,772 - -0.3
3,808,834 + +0.2
3,808,835 - +0.7
3,808,835 - +1.8
3,808,835 - -0.5
3,808,895 + +0.3
3,809,037 - -1.4
3,809,273 + PS417_17435 0.21 -0.1
3,809,273 + PS417_17435 0.21 -0.3
3,809,274 - PS417_17435 0.21 -1.8
3,809,334 - PS417_17435 0.24 -0.5
3,809,408 + PS417_17435 0.29 +0.1
3,809,408 + PS417_17435 0.29 +1.8
3,809,409 - PS417_17435 0.29 +0.3
3,809,672 + PS417_17435 0.43 -1.2
3,809,706 - PS417_17435 0.45 -1.3

Or see this region's nucleotide sequence