Experiment: soil sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01320 and PS417_01325 overlap by 4 nucleotides PS417_01325 and PS417_01330 overlap by 4 nucleotides PS417_01330 and PS417_01335 are separated by 151 nucleotides
PS417_01320: PS417_01320 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 286,327 to 286,872
_01320
PS417_01325: PS417_01325 - glucose-1-phosphate thymidylyltransferase, at 286,869 to 287,744
_01325
PS417_01330: PS417_01330 - dTDP-glucose 4,6-dehydratase, at 287,741 to 288,823
_01330
PS417_01335: PS417_01335 - hypothetical protein, at 288,975 to 291,875
_01335
Position (kb) 287
288
289 Strain fitness (log2 ratio) -1
0
1
2 at 287.790 kb on + strand at 288.868 kb on + strand at 288.868 kb on + strand at 288.869 kb on - strand at 288.945 kb on + strand at 288.946 kb on - strand at 288.946 kb on - strand at 288.946 kb on - strand at 289.009 kb on + strand at 289.063 kb on - strand at 289.114 kb on - strand at 289.114 kb on - strand at 289.114 kb on - strand at 289.209 kb on - strand at 289.314 kb on + strand, within PS417_01335 at 289.315 kb on - strand, within PS417_01335 at 289.315 kb on - strand, within PS417_01335
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB remove 287,790 + -0.7 288,868 + -0.2 288,868 + -0.2 288,869 - +0.7 288,945 + -0.7 288,946 - +1.4 288,946 - -0.6 288,946 - +0.8 289,009 + +0.8 289,063 - +1.9 289,114 - +0.7 289,114 - -0.7 289,114 - +0.6 289,209 - -0.6 289,314 + PS417_01335 0.12 -0.4 289,315 - PS417_01335 0.12 -0.4 289,315 - PS417_01335 0.12 +0.5
Or see this region's nucleotide sequence