Experiment: soil sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00500 and PS417_00505 are separated by 72 nucleotides PS417_00505 and PS417_00510 are separated by 57 nucleotides
PS417_00500: PS417_00500 - membrane protein, at 98,990 to 100,021
_00500
PS417_00505: PS417_00505 - peptidase M16, at 100,094 to 101,476
_00505
PS417_00510: PS417_00510 - membrane protein, at 101,534 to 103,192
_00510
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.158 kb on - strand, within PS417_00500 at 99.208 kb on - strand, within PS417_00500 at 99.208 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.631 kb on - strand, within PS417_00500 at 99.634 kb on - strand, within PS417_00500 at 100.064 kb on + strand at 100.096 kb on - strand at 100.113 kb on + strand at 100.133 kb on + strand at 100.133 kb on + strand at 100.133 kb on + strand at 100.185 kb on + strand at 100.185 kb on + strand at 100.336 kb on - strand, within PS417_00505 at 100.463 kb on + strand, within PS417_00505 at 100.561 kb on - strand, within PS417_00505 at 100.561 kb on - strand, within PS417_00505 at 100.612 kb on - strand, within PS417_00505 at 100.629 kb on + strand, within PS417_00505 at 100.629 kb on + strand, within PS417_00505 at 100.630 kb on - strand, within PS417_00505 at 101.398 kb on - strand at 101.398 kb on - strand at 101.451 kb on - strand at 101.476 kb on + strand at 101.477 kb on - strand at 101.507 kb on + strand at 101.508 kb on - strand at 101.560 kb on + strand at 101.563 kb on - strand at 101.604 kb on - strand at 101.607 kb on + strand at 101.607 kb on + strand at 101.607 kb on + strand at 101.608 kb on - strand at 101.608 kb on - strand at 101.608 kb on - strand at 102.348 kb on + strand, within PS417_00510
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB remove 99,158 - PS417_00500 0.16 -0.8 99,208 - PS417_00500 0.21 +0.9 99,208 - PS417_00500 0.21 +0.1 99,517 - PS417_00500 0.51 -0.5 99,517 - PS417_00500 0.51 -1.0 99,517 - PS417_00500 0.51 -0.4 99,631 - PS417_00500 0.62 -1.3 99,634 - PS417_00500 0.62 -0.6 100,064 + -0.0 100,096 - -0.0 100,113 + -1.3 100,133 + -0.9 100,133 + +0.0 100,133 + -0.3 100,185 + -1.0 100,185 + -0.1 100,336 - PS417_00505 0.17 +0.9 100,463 + PS417_00505 0.27 -0.7 100,561 - PS417_00505 0.34 +0.1 100,561 - PS417_00505 0.34 -0.3 100,612 - PS417_00505 0.37 -0.4 100,629 + PS417_00505 0.39 -2.1 100,629 + PS417_00505 0.39 -2.2 100,630 - PS417_00505 0.39 +1.4 101,398 - +0.2 101,398 - +0.3 101,451 - +2.1 101,476 + -0.3 101,477 - +0.1 101,507 + +0.5 101,508 - -1.0 101,560 + -0.5 101,563 - +2.0 101,604 - +0.5 101,607 + +0.7 101,607 + -0.1 101,607 + +1.1 101,608 - +0.8 101,608 - -1.3 101,608 - -0.6 102,348 + PS417_00510 0.49 -2.2
Or see this region's nucleotide sequence