Experiment: Methyl-B-D-galactopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1030 and Atu1031 are separated by 157 nucleotides Atu1031 and Atu1032 are separated by 267 nucleotides Atu1032 and Atu1033 overlap by 4 nucleotides Atu1033 and Atu1034 are separated by 206 nucleotides
Atu1030: Atu1030 - GTP pyrophosphohydrolase/synthetase, RelA/SpoT family, at 1,022,661 to 1,024,895
Atu1030
Atu1031: Atu1031 - hypothetical protein, at 1,025,053 to 1,025,238
Atu1031
Atu1032: Atu1032 - hypothetical protein, at 1,025,506 to 1,026,084
Atu1032
Atu1033: Atu1033 - holo-(acyl-carrier Protein) synthase, at 1,026,081 to 1,026,485
Atu1033
Atu1034: Atu1034 - prokaryotic type I signal peptidase, at 1,026,692 to 1,027,438
Atu1034
Position (kb)
1025
1026
1027 Strain fitness (log2 ratio)
-1
0
1 at 1024.986 kb on + strand at 1025.042 kb on + strand at 1025.073 kb on + strand, within Atu1031 at 1025.213 kb on - strand, within Atu1031 at 1025.216 kb on + strand, within Atu1031 at 1025.247 kb on + strand at 1025.255 kb on - strand at 1025.257 kb on + strand at 1025.318 kb on - strand at 1025.337 kb on + strand at 1025.391 kb on + strand at 1025.567 kb on - strand, within Atu1032 at 1025.849 kb on + strand, within Atu1032 at 1025.855 kb on + strand, within Atu1032 at 1025.883 kb on + strand, within Atu1032 at 1025.891 kb on - strand, within Atu1032 at 1025.891 kb on - strand, within Atu1032 at 1025.915 kb on - strand, within Atu1032 at 1025.937 kb on - strand, within Atu1032 at 1025.955 kb on - strand, within Atu1032 at 1026.003 kb on - strand, within Atu1032
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl-B-D-galactopyranoside (C) remove 1,024,986 + -0.4 1,025,042 + -0.3 1,025,073 + Atu1031 0.11 -0.1 1,025,213 - Atu1031 0.86 -0.1 1,025,216 + Atu1031 0.88 -0.3 1,025,247 + +0.1 1,025,255 - -0.1 1,025,257 + +0.5 1,025,318 - -0.6 1,025,337 + +0.9 1,025,391 + -0.2 1,025,567 - Atu1032 0.11 -0.2 1,025,849 + Atu1032 0.59 +1.1 1,025,855 + Atu1032 0.60 +0.3 1,025,883 + Atu1032 0.65 +0.8 1,025,891 - Atu1032 0.66 -0.1 1,025,891 - Atu1032 0.66 -0.3 1,025,915 - Atu1032 0.71 +0.8 1,025,937 - Atu1032 0.74 +0.3 1,025,955 - Atu1032 0.78 -0.4 1,026,003 - Atu1032 0.86 +0.3
Or see this region's nucleotide sequence