Experiment: Methyl-B-D-galactopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0007 and Atu0008 are separated by 185 nucleotides Atu0008 and Atu0009 overlap by 4 nucleotides Atu0009 and Atu0010 overlap by 4 nucleotides Atu0010 and Atu0011 overlap by 4 nucleotides
Atu0007: Atu0007 - hypothetical protein, at 4,493 to 5,029
Atu0007
Atu0008: Atu0008 - hypothetical protein, at 5,215 to 5,868
Atu0008
Atu0009: Atu0009 - membrane-bound lytic murein transglycosylase, at 5,865 to 6,977
Atu0009
Atu0010: Atu0010 - hypothetical protein, at 6,974 to 7,543
Atu0010
Atu0011: Atu0011 - transcriptional regulator, at 7,540 to 7,905
Atu0011
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.888 kb on + strand, within Atu0007 at 4.906 kb on - strand, within Atu0007 at 4.916 kb on - strand, within Atu0007 at 4.936 kb on + strand, within Atu0007 at 4.936 kb on + strand, within Atu0007 at 4.944 kb on - strand, within Atu0007 at 5.029 kb on + strand at 5.067 kb on + strand at 5.067 kb on + strand at 5.114 kb on + strand at 5.122 kb on - strand at 5.176 kb on - strand at 5.228 kb on - strand at 5.334 kb on + strand, within Atu0008 at 5.335 kb on + strand, within Atu0008 at 5.343 kb on - strand, within Atu0008 at 5.431 kb on - strand, within Atu0008 at 5.431 kb on - strand, within Atu0008 at 5.535 kb on + strand, within Atu0008 at 5.543 kb on - strand, within Atu0008 at 5.543 kb on - strand, within Atu0008 at 5.784 kb on + strand, within Atu0008 at 5.801 kb on - strand, within Atu0008 at 5.830 kb on - strand at 5.842 kb on - strand at 5.875 kb on - strand at 5.909 kb on + strand at 5.990 kb on - strand, within Atu0009 at 6.003 kb on + strand, within Atu0009 at 6.055 kb on - strand, within Atu0009 at 6.098 kb on + strand, within Atu0009 at 6.165 kb on - strand, within Atu0009 at 6.172 kb on + strand, within Atu0009 at 6.224 kb on - strand, within Atu0009 at 6.289 kb on - strand, within Atu0009 at 6.289 kb on - strand, within Atu0009 at 6.435 kb on + strand, within Atu0009 at 6.435 kb on + strand, within Atu0009 at 6.527 kb on - strand, within Atu0009 at 6.538 kb on - strand, within Atu0009 at 6.660 kb on + strand, within Atu0009 at 6.710 kb on - strand, within Atu0009 at 6.742 kb on + strand, within Atu0009 at 6.801 kb on - strand, within Atu0009 at 6.827 kb on + strand, within Atu0009 at 6.920 kb on - strand at 7.026 kb on - strand at 7.098 kb on + strand, within Atu0010 at 7.148 kb on + strand, within Atu0010 at 7.200 kb on + strand, within Atu0010 at 7.200 kb on - strand, within Atu0010 at 7.208 kb on - strand, within Atu0010 at 7.228 kb on + strand, within Atu0010 at 7.271 kb on + strand, within Atu0010 at 7.334 kb on + strand, within Atu0010 at 7.363 kb on - strand, within Atu0010 at 7.378 kb on - strand, within Atu0010 at 7.378 kb on - strand, within Atu0010 at 7.378 kb on - strand, within Atu0010 at 7.378 kb on - strand, within Atu0010 at 7.405 kb on + strand, within Atu0010 at 7.410 kb on + strand, within Atu0010 at 7.423 kb on - strand, within Atu0010 at 7.761 kb on + strand, within Atu0011 at 7.800 kb on + strand, within Atu0011 at 7.812 kb on + strand, within Atu0011 at 7.866 kb on + strand, within Atu0011 at 7.910 kb on + strand at 7.922 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl-B-D-galactopyranoside (C) remove 4,888 + Atu0007 0.74 -0.2 4,906 - Atu0007 0.77 +0.3 4,916 - Atu0007 0.79 -0.3 4,936 + Atu0007 0.82 +0.4 4,936 + Atu0007 0.82 -0.2 4,944 - Atu0007 0.84 +0.0 5,029 + -0.7 5,067 + -0.3 5,067 + -0.6 5,114 + -0.3 5,122 - -0.7 5,176 - -0.5 5,228 - -0.2 5,334 + Atu0008 0.18 +0.0 5,335 + Atu0008 0.18 +0.9 5,343 - Atu0008 0.20 -0.6 5,431 - Atu0008 0.33 -0.9 5,431 - Atu0008 0.33 +0.4 5,535 + Atu0008 0.49 -0.6 5,543 - Atu0008 0.50 -0.5 5,543 - Atu0008 0.50 +0.1 5,784 + Atu0008 0.87 -0.8 5,801 - Atu0008 0.90 -0.4 5,830 - +0.4 5,842 - +0.2 5,875 - -0.4 5,909 + -0.5 5,990 - Atu0009 0.11 -0.4 6,003 + Atu0009 0.12 +2.0 6,055 - Atu0009 0.17 -0.8 6,098 + Atu0009 0.21 +0.3 6,165 - Atu0009 0.27 -0.6 6,172 + Atu0009 0.28 -0.4 6,224 - Atu0009 0.32 -0.2 6,289 - Atu0009 0.38 -0.5 6,289 - Atu0009 0.38 -0.9 6,435 + Atu0009 0.51 -0.0 6,435 + Atu0009 0.51 -0.4 6,527 - Atu0009 0.59 +0.3 6,538 - Atu0009 0.60 -1.1 6,660 + Atu0009 0.71 -0.2 6,710 - Atu0009 0.76 -0.5 6,742 + Atu0009 0.79 -0.8 6,801 - Atu0009 0.84 +0.3 6,827 + Atu0009 0.86 -0.3 6,920 - -0.0 7,026 - -2.5 7,098 + Atu0010 0.22 +0.1 7,148 + Atu0010 0.31 -0.2 7,200 + Atu0010 0.40 -1.0 7,200 - Atu0010 0.40 -0.1 7,208 - Atu0010 0.41 -0.1 7,228 + Atu0010 0.45 -0.0 7,271 + Atu0010 0.52 -0.9 7,334 + Atu0010 0.63 +0.0 7,363 - Atu0010 0.68 -0.2 7,378 - Atu0010 0.71 -0.4 7,378 - Atu0010 0.71 +0.2 7,378 - Atu0010 0.71 +0.1 7,378 - Atu0010 0.71 -0.9 7,405 + Atu0010 0.76 -0.3 7,410 + Atu0010 0.76 -0.3 7,423 - Atu0010 0.79 +0.4 7,761 + Atu0011 0.60 -0.4 7,800 + Atu0011 0.71 -0.7 7,812 + Atu0011 0.74 +0.1 7,866 + Atu0011 0.89 -0.4 7,910 + -0.4 7,922 + +0.2
Or see this region's nucleotide sequence