Strain Fitness in Pseudomonas putida KT2440 around PP_1563

Experiment: 1,3-Butandiol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_1560 and PP_1561 overlap by 10 nucleotidesPP_1561 and PP_1562 are separated by 127 nucleotidesPP_1562 and PP_1563 are separated by 23 nucleotidesPP_1563 and PP_1564 are separated by 11 nucleotidesPP_1564 and PP_1565 are separated by 31 nucleotides PP_1560: PP_1560 - conserved protein of unknown function, at 1,755,869 to 1,756,051 _1560 PP_1561: PP_1561 - putative Phage holin, at 1,756,042 to 1,756,410 _1561 PP_1562: PP_1562 - putative Phage terminase, small subunit, at 1,756,538 to 1,756,921 _1562 PP_1563: PP_1563 - putative Phage terminase, large subunit, at 1,756,945 to 1,758,630 _1563 PP_1564: PP_1564 - conserved exported protein of unknown function, at 1,758,642 to 1,758,806 _1564 PP_1565: PP_1565 - Phage portal protein, HK97 family, at 1,758,838 to 1,760,133 _1565 Position (kb) 1756 1757 1758 1759Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1755.989 kb on - strand, within PP_1560at 1756.025 kb on + strand, within PP_1560at 1756.026 kb on - strand, within PP_1560at 1756.026 kb on - strand, within PP_1560at 1756.026 kb on - strand, within PP_1560at 1756.111 kb on + strand, within PP_1561at 1756.112 kb on - strand, within PP_1561at 1756.134 kb on - strand, within PP_1561at 1756.167 kb on + strand, within PP_1561at 1756.167 kb on + strand, within PP_1561at 1756.168 kb on - strand, within PP_1561at 1756.234 kb on + strandat 1756.234 kb on + strand, within PP_1561at 1756.234 kb on + strand, within PP_1561at 1756.701 kb on - strand, within PP_1562at 1756.701 kb on - strand, within PP_1562at 1756.919 kb on + strandat 1756.920 kb on - strandat 1756.963 kb on + strandat 1756.964 kb on - strandat 1757.130 kb on + strand, within PP_1563at 1757.131 kb on - strand, within PP_1563at 1757.131 kb on - strand, within PP_1563at 1757.220 kb on + strand, within PP_1563at 1757.221 kb on - strand, within PP_1563at 1757.311 kb on + strand, within PP_1563at 1757.312 kb on - strand, within PP_1563at 1757.312 kb on - strand, within PP_1563at 1757.351 kb on - strand, within PP_1563at 1757.440 kb on + strand, within PP_1563at 1757.440 kb on + strand, within PP_1563at 1757.441 kb on - strand, within PP_1563at 1757.557 kb on + strand, within PP_1563at 1757.558 kb on - strand, within PP_1563at 1757.585 kb on - strand, within PP_1563at 1757.585 kb on - strand, within PP_1563at 1757.658 kb on + strand, within PP_1563at 1757.658 kb on + strand, within PP_1563at 1757.659 kb on - strand, within PP_1563at 1757.659 kb on - strand, within PP_1563at 1757.659 kb on - strand, within PP_1563at 1757.732 kb on + strand, within PP_1563at 1757.733 kb on - strand, within PP_1563at 1757.746 kb on + strand, within PP_1563at 1757.746 kb on + strand, within PP_1563at 1757.747 kb on - strand, within PP_1563at 1758.005 kb on - strand, within PP_1563at 1758.005 kb on - strand, within PP_1563at 1758.103 kb on + strand, within PP_1563at 1758.104 kb on - strand, within PP_1563at 1758.104 kb on - strand, within PP_1563at 1758.106 kb on + strand, within PP_1563at 1758.106 kb on + strand, within PP_1563at 1758.106 kb on + strand, within PP_1563at 1758.106 kb on + strand, within PP_1563at 1758.106 kb on + strandat 1758.106 kb on + strand, within PP_1563at 1758.107 kb on - strand, within PP_1563at 1758.107 kb on - strand, within PP_1563at 1758.107 kb on - strand, within PP_1563at 1758.176 kb on + strand, within PP_1563at 1758.271 kb on + strand, within PP_1563at 1758.271 kb on + strand, within PP_1563at 1758.386 kb on + strand, within PP_1563at 1758.386 kb on + strand, within PP_1563at 1758.386 kb on + strand, within PP_1563at 1758.387 kb on - strand, within PP_1563at 1758.387 kb on - strand, within PP_1563at 1758.387 kb on - strand, within PP_1563at 1758.435 kb on - strand, within PP_1563at 1758.491 kb on - strandat 1758.711 kb on + strand, within PP_1564at 1758.711 kb on + strand, within PP_1564at 1758.711 kb on + strand, within PP_1564at 1758.711 kb on + strand, within PP_1564at 1758.711 kb on + strand, within PP_1564at 1758.711 kb on + strand, within PP_1564at 1758.711 kb on + strand, within PP_1564at 1758.712 kb on - strand, within PP_1564at 1758.712 kb on - strand, within PP_1564at 1758.712 kb on - strand, within PP_1564at 1758.712 kb on - strand, within PP_1564at 1758.928 kb on + strandat 1758.928 kb on + strandat 1758.928 kb on + strandat 1758.928 kb on + strandat 1758.929 kb on - strandat 1758.929 kb on - strandat 1758.929 kb on - strandat 1758.929 kb on - strandat 1758.929 kb on - strandat 1758.931 kb on + strandat 1758.931 kb on + strandat 1758.932 kb on - strandat 1758.932 kb on - strandat 1759.051 kb on + strand, within PP_1565at 1759.051 kb on + strand, within PP_1565at 1759.610 kb on - strand, within PP_1565

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1,3-Butandiol (C)
remove
1,755,989 - PP_1560 0.66 +1.6
1,756,025 + PP_1560 0.85 +1.0
1,756,026 - PP_1560 0.86 +1.4
1,756,026 - PP_1560 0.86 +1.6
1,756,026 - PP_1560 0.86 +1.3
1,756,111 + PP_1561 0.19 -0.2
1,756,112 - PP_1561 0.19 +1.8
1,756,134 - PP_1561 0.25 +0.9
1,756,167 + PP_1561 0.34 +0.5
1,756,167 + PP_1561 0.34 +0.8
1,756,168 - PP_1561 0.34 -0.4
1,756,234 + +0.3
1,756,234 + PP_1561 0.52 +1.6
1,756,234 + PP_1561 0.52 +2.6
1,756,701 - PP_1562 0.42 +2.1
1,756,701 - PP_1562 0.42 +1.1
1,756,919 + +2.1
1,756,920 - +2.1
1,756,963 + -0.4
1,756,964 - +1.4
1,757,130 + PP_1563 0.11 +2.0
1,757,131 - PP_1563 0.11 +0.5
1,757,131 - PP_1563 0.11 +1.5
1,757,220 + PP_1563 0.16 +1.2
1,757,221 - PP_1563 0.16 +0.8
1,757,311 + PP_1563 0.22 -0.1
1,757,312 - PP_1563 0.22 +2.4
1,757,312 - PP_1563 0.22 +1.5
1,757,351 - PP_1563 0.24 +1.6
1,757,440 + PP_1563 0.29 +1.6
1,757,440 + PP_1563 0.29 +0.6
1,757,441 - PP_1563 0.29 +1.8
1,757,557 + PP_1563 0.36 -1.8
1,757,558 - PP_1563 0.36 +1.8
1,757,585 - PP_1563 0.38 +2.1
1,757,585 - PP_1563 0.38 +1.7
1,757,658 + PP_1563 0.42 +1.3
1,757,658 + PP_1563 0.42 +1.8
1,757,659 - PP_1563 0.42 +0.7
1,757,659 - PP_1563 0.42 +1.5
1,757,659 - PP_1563 0.42 +0.4
1,757,732 + PP_1563 0.47 +0.9
1,757,733 - PP_1563 0.47 -1.0
1,757,746 + PP_1563 0.48 +0.9
1,757,746 + PP_1563 0.48 +2.3
1,757,747 - PP_1563 0.48 +2.0
1,758,005 - PP_1563 0.63 +2.3
1,758,005 - PP_1563 0.63 +1.1
1,758,103 + PP_1563 0.69 +0.2
1,758,104 - PP_1563 0.69 +1.7
1,758,104 - PP_1563 0.69 +1.0
1,758,106 + PP_1563 0.69 +0.9
1,758,106 + PP_1563 0.69 +1.1
1,758,106 + PP_1563 0.69 -0.0
1,758,106 + PP_1563 0.69 -0.2
1,758,106 + +1.6
1,758,106 + PP_1563 0.69 +0.4
1,758,107 - PP_1563 0.69 +0.4
1,758,107 - PP_1563 0.69 -1.1
1,758,107 - PP_1563 0.69 +1.1
1,758,176 + PP_1563 0.73 +0.5
1,758,271 + PP_1563 0.79 +1.3
1,758,271 + PP_1563 0.79 +1.0
1,758,386 + PP_1563 0.85 +0.7
1,758,386 + PP_1563 0.85 +0.6
1,758,386 + PP_1563 0.85 +0.8
1,758,387 - PP_1563 0.86 +1.6
1,758,387 - PP_1563 0.86 +0.9
1,758,387 - PP_1563 0.86 +0.4
1,758,435 - PP_1563 0.88 +1.3
1,758,491 - +0.4
1,758,711 + PP_1564 0.42 -0.9
1,758,711 + PP_1564 0.42 +1.4
1,758,711 + PP_1564 0.42 +0.9
1,758,711 + PP_1564 0.42 +2.2
1,758,711 + PP_1564 0.42 -0.0
1,758,711 + PP_1564 0.42 +0.4
1,758,711 + PP_1564 0.42 +1.8
1,758,712 - PP_1564 0.42 -1.0
1,758,712 - PP_1564 0.42 +1.8
1,758,712 - PP_1564 0.42 +1.4
1,758,712 - PP_1564 0.42 +0.6
1,758,928 + +1.0
1,758,928 + +0.8
1,758,928 + +0.6
1,758,928 + -4.3
1,758,929 - +0.8
1,758,929 - +1.3
1,758,929 - +1.6
1,758,929 - +2.1
1,758,929 - +0.5
1,758,931 + +0.1
1,758,931 + +0.4
1,758,932 - -0.5
1,758,932 - +0.8
1,759,051 + PP_1565 0.16 +0.5
1,759,051 + PP_1565 0.16 -1.5
1,759,610 - PP_1565 0.60 -0.7

Or see this region's nucleotide sequence