Experiment: 1,3-Butandiol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0676 and PP_0677 are separated by 67 nucleotides PP_0677 and PP_0678 are separated by 101 nucleotides PP_0678 and PP_0679 are separated by 71 nucleotides PP_0679 and PP_0680 are separated by 223 nucleotides
PP_0676: PP_0676 - putative Transcription elongation factor, at 790,172 to 790,669
_0676
PP_0677: PP_0677 - putative Lipoprotein, at 790,737 to 791,093
_0677
PP_0678: PP_0678 - conserved exported protein of unknown function, at 791,195 to 793,048
_0678
PP_0679: PP_0679 - conserved exported protein of unknown function, at 793,120 to 793,635
_0679
PP_0680: PP_0680 - ATP-dependent protease-like protein, at 793,859 to 796,297
_0680
Position (kb) 791
792
793
794 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 790.203 kb on - strand at 790.203 kb on - strand at 790.391 kb on + strand, within PP_0676 at 790.399 kb on + strand, within PP_0676 at 790.452 kb on + strand, within PP_0676 at 790.584 kb on + strand, within PP_0676 at 790.584 kb on + strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.671 kb on + strand at 790.671 kb on + strand at 790.671 kb on + strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.750 kb on + strand at 790.751 kb on - strand at 790.823 kb on - strand, within PP_0677 at 790.892 kb on - strand, within PP_0677 at 790.910 kb on - strand, within PP_0677 at 790.917 kb on + strand, within PP_0677 at 791.093 kb on + strand at 791.093 kb on + strand at 791.128 kb on + strand at 791.148 kb on - strand at 791.199 kb on + strand at 791.199 kb on + strand at 791.200 kb on - strand at 791.205 kb on + strand at 791.206 kb on - strand at 791.206 kb on - strand at 791.206 kb on - strand at 791.321 kb on + strand at 791.321 kb on + strand at 791.322 kb on - strand at 791.322 kb on - strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.353 kb on - strand at 791.353 kb on - strand at 791.691 kb on + strand, within PP_0678 at 791.691 kb on + strand, within PP_0678 at 791.745 kb on + strand, within PP_0678 at 791.745 kb on + strand, within PP_0678 at 791.745 kb on + strand, within PP_0678 at 791.770 kb on - strand, within PP_0678 at 791.770 kb on - strand, within PP_0678 at 791.770 kb on - strand, within PP_0678 at 791.787 kb on + strand, within PP_0678 at 791.788 kb on - strand, within PP_0678 at 791.796 kb on + strand, within PP_0678 at 792.072 kb on - strand, within PP_0678 at 792.279 kb on + strand, within PP_0678 at 792.280 kb on - strand, within PP_0678 at 792.349 kb on + strand, within PP_0678 at 792.350 kb on - strand, within PP_0678 at 792.417 kb on + strand, within PP_0678 at 792.417 kb on + strand, within PP_0678 at 792.492 kb on + strand, within PP_0678 at 792.518 kb on + strand, within PP_0678 at 792.522 kb on + strand, within PP_0678 at 792.523 kb on - strand at 792.523 kb on - strand, within PP_0678 at 792.523 kb on - strand, within PP_0678 at 792.523 kb on - strand, within PP_0678 at 792.543 kb on + strand, within PP_0678 at 792.543 kb on + strand, within PP_0678 at 792.544 kb on - strand, within PP_0678 at 792.544 kb on - strand, within PP_0678 at 792.633 kb on + strand, within PP_0678 at 792.633 kb on + strand, within PP_0678 at 792.633 kb on + strand, within PP_0678 at 792.767 kb on + strand, within PP_0678 at 792.768 kb on - strand, within PP_0678 at 792.768 kb on - strand, within PP_0678 at 792.807 kb on + strand, within PP_0678 at 792.807 kb on + strand, within PP_0678 at 792.807 kb on + strand, within PP_0678 at 792.808 kb on - strand at 792.808 kb on - strand, within PP_0678 at 792.808 kb on - strand, within PP_0678 at 792.891 kb on + strand at 792.891 kb on + strand at 792.891 kb on + strand at 792.891 kb on + strand at 792.892 kb on - strand at 792.892 kb on - strand at 792.924 kb on + strand at 792.924 kb on + strand at 792.925 kb on - strand at 792.925 kb on - strand at 793.059 kb on + strand at 793.060 kb on - strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.122 kb on - strand at 793.132 kb on - strand at 793.136 kb on + strand at 793.136 kb on + strand at 793.136 kb on + strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.257 kb on - strand, within PP_0679 at 793.257 kb on - strand, within PP_0679 at 793.276 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.385 kb on + strand, within PP_0679 at 793.386 kb on - strand, within PP_0679 at 793.467 kb on + strand, within PP_0679 at 793.608 kb on + strand at 793.608 kb on + strand at 793.609 kb on - strand at 793.609 kb on - strand at 793.777 kb on + strand at 793.777 kb on + strand at 793.777 kb on + strand at 793.777 kb on + strand at 793.778 kb on - strand at 793.778 kb on - strand at 793.778 kb on - strand at 793.830 kb on + strand at 793.831 kb on - strand at 793.831 kb on - strand at 793.847 kb on + strand at 793.847 kb on + strand at 793.939 kb on + strand at 794.037 kb on - strand at 794.045 kb on + strand at 794.045 kb on + strand at 794.045 kb on + strand at 794.046 kb on - strand at 794.046 kb on - strand at 794.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1,3-Butandiol (C) remove 790,203 - -0.5 790,203 - -1.6 790,391 + PP_0676 0.44 +0.4 790,399 + PP_0676 0.46 +0.5 790,452 + PP_0676 0.56 +0.6 790,584 + PP_0676 0.83 +0.8 790,584 + PP_0676 0.83 +1.0 790,585 - PP_0676 0.83 +0.2 790,585 - PP_0676 0.83 -1.0 790,585 - PP_0676 0.83 +0.3 790,585 - PP_0676 0.83 -0.0 790,585 - PP_0676 0.83 -0.8 790,671 + -0.8 790,671 + +1.4 790,671 + +1.0 790,672 - -0.1 790,672 - -0.1 790,672 - -1.1 790,672 - +0.9 790,672 - -2.2 790,672 - -2.0 790,750 + +0.4 790,751 - -1.1 790,823 - PP_0677 0.24 +1.4 790,892 - PP_0677 0.43 +1.3 790,910 - PP_0677 0.48 -1.4 790,917 + PP_0677 0.50 -1.2 791,093 + +1.1 791,093 + -3.1 791,128 + -0.5 791,148 - +1.0 791,199 + -0.0 791,199 + -2.1 791,200 - +2.3 791,205 + +0.5 791,206 - -4.7 791,206 - +0.9 791,206 - +1.1 791,321 + +0.1 791,321 + +0.7 791,322 - +2.2 791,322 - +1.9 791,352 + +0.5 791,352 + -0.0 791,352 + +0.1 791,353 - +1.3 791,353 - +1.3 791,691 + PP_0678 0.27 +0.3 791,691 + PP_0678 0.27 +0.5 791,745 + PP_0678 0.30 +1.5 791,745 + PP_0678 0.30 +1.6 791,745 + PP_0678 0.30 +0.3 791,770 - PP_0678 0.31 +1.2 791,770 - PP_0678 0.31 +0.5 791,770 - PP_0678 0.31 -1.1 791,787 + PP_0678 0.32 +0.6 791,788 - PP_0678 0.32 +1.6 791,796 + PP_0678 0.32 -4.0 792,072 - PP_0678 0.47 +1.0 792,279 + PP_0678 0.58 +1.6 792,280 - PP_0678 0.59 +0.1 792,349 + PP_0678 0.62 +0.6 792,350 - PP_0678 0.62 -0.3 792,417 + PP_0678 0.66 -2.9 792,417 + PP_0678 0.66 +0.1 792,492 + PP_0678 0.70 -0.6 792,518 + PP_0678 0.71 +2.1 792,522 + PP_0678 0.72 +0.2 792,523 - +2.5 792,523 - PP_0678 0.72 +2.6 792,523 - PP_0678 0.72 +0.5 792,523 - PP_0678 0.72 -0.3 792,543 + PP_0678 0.73 +1.2 792,543 + PP_0678 0.73 +1.9 792,544 - PP_0678 0.73 +2.5 792,544 - PP_0678 0.73 +1.8 792,633 + PP_0678 0.78 +0.8 792,633 + PP_0678 0.78 -0.1 792,633 + PP_0678 0.78 +1.5 792,767 + PP_0678 0.85 -3.1 792,768 - PP_0678 0.85 -1.3 792,768 - PP_0678 0.85 +1.5 792,807 + PP_0678 0.87 +0.8 792,807 + PP_0678 0.87 +1.0 792,807 + PP_0678 0.87 -0.6 792,808 - +1.1 792,808 - PP_0678 0.87 +1.3 792,808 - PP_0678 0.87 +0.4 792,891 + +0.9 792,891 + -0.1 792,891 + -0.2 792,891 + -0.7 792,892 - +0.8 792,892 - +0.1 792,924 + -2.9 792,924 + +1.1 792,925 - -0.2 792,925 - +1.2 793,059 + +1.3 793,060 - -0.7 793,121 + -2.5 793,121 + -3.8 793,121 + -2.1 793,121 + +1.1 793,122 - -0.6 793,132 - -0.2 793,136 + +1.5 793,136 + +0.8 793,136 + -0.0 793,137 - +0.4 793,137 - -0.9 793,137 - +0.3 793,137 - +1.5 793,137 - -0.0 793,257 - PP_0679 0.27 +0.1 793,257 - PP_0679 0.27 +2.9 793,276 + PP_0679 0.30 -2.2 793,295 + PP_0679 0.34 +1.3 793,295 + PP_0679 0.34 +1.1 793,295 + PP_0679 0.34 -2.6 793,295 + PP_0679 0.34 -3.2 793,296 - PP_0679 0.34 +0.7 793,296 - PP_0679 0.34 +1.4 793,296 - PP_0679 0.34 +0.0 793,296 - PP_0679 0.34 -0.2 793,296 - PP_0679 0.34 +0.6 793,385 + PP_0679 0.51 +1.3 793,386 - PP_0679 0.52 +1.3 793,467 + PP_0679 0.67 +0.4 793,608 + +0.1 793,608 + +0.9 793,609 - +0.6 793,609 - -2.0 793,777 + +1.1 793,777 + +1.2 793,777 + +1.5 793,777 + -0.7 793,778 - +0.5 793,778 - -1.1 793,778 - +0.6 793,830 + -1.0 793,831 - -3.1 793,831 - +1.3 793,847 + -1.1 793,847 + +0.5 793,939 + +0.3 794,037 - -1.1 794,045 + +0.9 794,045 + +0.2 794,045 + -0.3 794,046 - +0.5 794,046 - -0.4 794,046 - -1.3
Or see this region's nucleotide sequence