Strain Fitness in Pseudomonas simiae WCS417 around PS417_04670

Experiment: soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04665 and PS417_04670 are separated by 112 nucleotidesPS417_04670 and PS417_04675 are separated by 77 nucleotides PS417_04665: PS417_04665 - cell division protein FtsZ, at 1,033,394 to 1,034,590 _04665 PS417_04670: PS417_04670 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, at 1,034,703 to 1,035,614 _04670 PS417_04675: PS417_04675 - deoxyribonuclease, at 1,035,692 to 1,037,191 _04675 Position (kb) 1034 1035 1036Strain fitness (log2 ratio) -1 0 1at 1035.588 kb on + strandat 1035.612 kb on + strandat 1035.617 kb on - strandat 1035.694 kb on - strandat 1035.750 kb on + strandat 1035.750 kb on + strandat 1035.750 kb on + strandat 1035.750 kb on + strandat 1035.773 kb on + strandat 1035.773 kb on + strandat 1036.337 kb on + strand, within PS417_04675at 1036.401 kb on + strand, within PS417_04675at 1036.464 kb on - strand, within PS417_04675at 1036.553 kb on - strand, within PS417_04675at 1036.556 kb on - strand, within PS417_04675

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 3; outgrowth in LB
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1,035,588 + +0.6
1,035,612 + -0.9
1,035,617 - -0.1
1,035,694 - -0.4
1,035,750 + -0.4
1,035,750 + +0.4
1,035,750 + +0.8
1,035,750 + -1.3
1,035,773 + +1.5
1,035,773 + -1.4
1,036,337 + PS417_04675 0.43 +0.1
1,036,401 + PS417_04675 0.47 -0.1
1,036,464 - PS417_04675 0.51 -0.1
1,036,553 - PS417_04675 0.57 -0.9
1,036,556 - PS417_04675 0.58 +0.5

Or see this region's nucleotide sequence