Experiment: soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03370 and PS417_03375 are separated by 225 nucleotides PS417_03375 and PS417_03380 are separated by 38 nucleotides PS417_03380 and PS417_03385 are separated by 31 nucleotides
PS417_03370: PS417_03370 - porin, at 775,191 to 776,510
_03370
PS417_03375: PS417_03375 - hypothetical protein, at 776,736 to 777,068
_03375
PS417_03380: PS417_03380 - hypothetical protein, at 777,107 to 777,544
_03380
PS417_03385: PS417_03385 - flavin reductase, at 777,576 to 778,163
_03385
Position (kb) 776
777
778 Strain fitness (log2 ratio) -2
-1
0
1
2 at 775.786 kb on + strand, within PS417_03370 at 775.786 kb on + strand, within PS417_03370 at 775.903 kb on + strand, within PS417_03370 at 775.903 kb on + strand, within PS417_03370 at 776.076 kb on + strand, within PS417_03370 at 776.076 kb on + strand, within PS417_03370 at 776.140 kb on + strand, within PS417_03370 at 776.140 kb on + strand, within PS417_03370 at 776.141 kb on - strand, within PS417_03370 at 776.141 kb on - strand, within PS417_03370 at 776.141 kb on - strand, within PS417_03370 at 776.494 kb on + strand at 776.494 kb on + strand at 776.626 kb on - strand at 776.662 kb on + strand at 776.663 kb on - strand at 776.817 kb on - strand, within PS417_03375 at 776.817 kb on - strand, within PS417_03375 at 776.817 kb on - strand, within PS417_03375 at 776.840 kb on + strand, within PS417_03375 at 776.994 kb on + strand, within PS417_03375 at 776.995 kb on - strand, within PS417_03375 at 776.995 kb on - strand, within PS417_03375 at 777.020 kb on + strand, within PS417_03375 at 777.031 kb on - strand, within PS417_03375 at 777.252 kb on + strand, within PS417_03380 at 777.454 kb on - strand, within PS417_03380 at 777.542 kb on + strand at 777.988 kb on - strand, within PS417_03385 at 777.988 kb on - strand, within PS417_03385
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 3; outgrowth in LB remove 775,786 + PS417_03370 0.45 +0.9 775,786 + PS417_03370 0.45 +1.2 775,903 + PS417_03370 0.54 +0.7 775,903 + PS417_03370 0.54 -0.1 776,076 + PS417_03370 0.67 -1.0 776,076 + PS417_03370 0.67 +0.0 776,140 + PS417_03370 0.72 +0.1 776,140 + PS417_03370 0.72 -1.8 776,141 - PS417_03370 0.72 +2.3 776,141 - PS417_03370 0.72 -0.1 776,141 - PS417_03370 0.72 -0.5 776,494 + -0.4 776,494 + -1.3 776,626 - -0.8 776,662 + -1.3 776,663 - -0.1 776,817 - PS417_03375 0.24 -0.5 776,817 - PS417_03375 0.24 -0.8 776,817 - PS417_03375 0.24 -1.6 776,840 + PS417_03375 0.31 -0.4 776,994 + PS417_03375 0.77 -1.2 776,995 - PS417_03375 0.78 -1.0 776,995 - PS417_03375 0.78 -1.8 777,020 + PS417_03375 0.85 -0.7 777,031 - PS417_03375 0.89 +0.4 777,252 + PS417_03380 0.33 +1.0 777,454 - PS417_03380 0.79 -0.5 777,542 + +0.1 777,988 - PS417_03385 0.70 -0.5 777,988 - PS417_03385 0.70 -0.5
Or see this region's nucleotide sequence