Experiment: soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02690 and PS417_02695 are separated by 181 nucleotides PS417_02695 and PS417_02700 are separated by 22 nucleotides PS417_02700 and PS417_02705 are separated by 13 nucleotides
PS417_02690: PS417_02690 - N-acylglucosamine 2-epimerase, at 615,662 to 616,780
_02690
PS417_02695: PS417_02695 - protein hupE, at 616,962 to 617,534
_02695
PS417_02700: PS417_02700 - urease accessory protein UreG, at 617,557 to 618,171
_02700
PS417_02705: PS417_02705 - urease accessory protein UreF, at 618,185 to 618,859
_02705
Position (kb) 616
617
618 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 616.087 kb on + strand, within PS417_02690 at 616.088 kb on - strand, within PS417_02690 at 616.303 kb on - strand, within PS417_02690 at 616.480 kb on - strand, within PS417_02690 at 616.596 kb on + strand, within PS417_02690 at 616.597 kb on - strand, within PS417_02690 at 616.597 kb on - strand, within PS417_02690 at 616.671 kb on + strand at 616.808 kb on - strand at 616.808 kb on - strand at 616.890 kb on + strand at 616.890 kb on + strand at 616.904 kb on - strand at 617.311 kb on - strand, within PS417_02695 at 617.807 kb on + strand, within PS417_02700 at 617.808 kb on - strand, within PS417_02700 at 617.808 kb on - strand, within PS417_02700 at 618.044 kb on + strand, within PS417_02700 at 618.044 kb on + strand, within PS417_02700 at 618.045 kb on - strand, within PS417_02700 at 618.075 kb on - strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.172 kb on - strand at 618.172 kb on - strand at 618.172 kb on - strand at 618.172 kb on - strand at 618.197 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 3; outgrowth in LB remove 616,087 + PS417_02690 0.38 -0.6 616,088 - PS417_02690 0.38 +0.2 616,303 - PS417_02690 0.57 -0.2 616,480 - PS417_02690 0.73 -1.3 616,596 + PS417_02690 0.83 +0.4 616,597 - PS417_02690 0.84 -0.6 616,597 - PS417_02690 0.84 +0.7 616,671 + -2.1 616,808 - +3.0 616,808 - +0.5 616,890 + -0.3 616,890 + -0.4 616,904 - -0.9 617,311 - PS417_02695 0.61 +1.0 617,807 + PS417_02700 0.41 +0.7 617,808 - PS417_02700 0.41 -1.0 617,808 - PS417_02700 0.41 +1.1 618,044 + PS417_02700 0.79 -0.5 618,044 + PS417_02700 0.79 -0.7 618,045 - PS417_02700 0.79 -0.7 618,075 - +0.9 618,171 + -0.1 618,171 + -0.3 618,171 + -1.1 618,171 + -0.5 618,171 + +0.2 618,172 - +0.5 618,172 - -0.3 618,172 - -0.3 618,172 - +0.3 618,197 + -0.2
Or see this region's nucleotide sequence