Experiment: soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01970 and PS417_01975 are separated by 69 nucleotides PS417_01975 and PS417_01980 are separated by 4 nucleotides PS417_01980 and PS417_01985 are separated by 125 nucleotides
PS417_01970: PS417_01970 - pilus assembly protein, at 437,394 to 438,353
_01970
PS417_01975: PS417_01975 - pilus assembly protein PilQ, at 438,423 to 439,748
_01975
PS417_01980: PS417_01980 - shikimate kinase, at 439,753 to 440,271
_01980
PS417_01985: PS417_01985 - 3-dehydroquinate synthase, at 440,397 to 441,497
_01985
Position (kb) 438
439
440 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 437.453 kb on - strand at 437.517 kb on + strand, within PS417_01970 at 437.517 kb on + strand, within PS417_01970 at 437.518 kb on - strand, within PS417_01970 at 437.950 kb on - strand, within PS417_01970 at 437.980 kb on + strand, within PS417_01970 at 438.181 kb on + strand, within PS417_01970 at 438.182 kb on - strand, within PS417_01970 at 438.182 kb on - strand, within PS417_01970 at 438.338 kb on - strand at 438.448 kb on + strand at 438.479 kb on + strand at 438.495 kb on + strand at 438.496 kb on - strand at 438.816 kb on + strand, within PS417_01975 at 438.816 kb on + strand, within PS417_01975 at 438.816 kb on + strand, within PS417_01975 at 439.209 kb on + strand, within PS417_01975 at 439.210 kb on - strand, within PS417_01975 at 439.482 kb on + strand, within PS417_01975 at 439.483 kb on - strand, within PS417_01975 at 439.540 kb on + strand, within PS417_01975 at 439.606 kb on + strand, within PS417_01975 at 439.611 kb on - strand, within PS417_01975 at 439.611 kb on - strand, within PS417_01975 at 439.611 kb on - strand, within PS417_01975 at 439.637 kb on + strand at 439.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 3; outgrowth in LB remove 437,453 - +1.7 437,517 + PS417_01970 0.13 +0.4 437,517 + PS417_01970 0.13 +2.0 437,518 - PS417_01970 0.13 +0.1 437,950 - PS417_01970 0.58 +0.2 437,980 + PS417_01970 0.61 +0.4 438,181 + PS417_01970 0.82 -0.3 438,182 - PS417_01970 0.82 +1.4 438,182 - PS417_01970 0.82 +0.0 438,338 - +0.3 438,448 + +0.6 438,479 + +1.0 438,495 + +0.7 438,496 - -1.9 438,816 + PS417_01975 0.30 -1.8 438,816 + PS417_01975 0.30 -1.7 438,816 + PS417_01975 0.30 -0.5 439,209 + PS417_01975 0.59 -0.5 439,210 - PS417_01975 0.59 -3.4 439,482 + PS417_01975 0.80 -0.3 439,483 - PS417_01975 0.80 +0.0 439,540 + PS417_01975 0.84 +0.3 439,606 + PS417_01975 0.89 +0.6 439,611 - PS417_01975 0.90 -1.7 439,611 - PS417_01975 0.90 +0.8 439,611 - PS417_01975 0.90 +2.1 439,637 + +0.9 439,715 + +1.2
Or see this region's nucleotide sequence