Experiment: Decanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0120 and PP_0121 are separated by 49 nucleotides PP_0121 and PP_0122 are separated by 69 nucleotides PP_0122 and PP_0123 are separated by 75 nucleotides
PP_0120: PP_0120 - putative zinc ABC transporter, at 125,182 to 126,090
_0120
PP_0121: PP_0121 - homoserine kinase, at 126,140 to 127,090
_0121
PP_0122: PP_0122 - conserved exported protein of unknown function, at 127,160 to 127,447
_0122
PP_0123: PP_0123 - DNA polymerase I, 5, at 127,523 to 130,270
_0123
Position (kb) 126
127
128 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 125.144 kb on + strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.147 kb on + strand at 125.147 kb on + strand at 125.147 kb on + strand at 125.147 kb on + strand at 125.148 kb on - strand at 125.153 kb on - strand at 125.174 kb on + strand at 125.256 kb on + strand at 125.256 kb on + strand at 125.347 kb on + strand, within PP_0120 at 125.398 kb on + strand, within PP_0120 at 125.452 kb on - strand, within PP_0120 at 125.452 kb on - strand, within PP_0120 at 125.452 kb on - strand, within PP_0120 at 125.571 kb on + strand at 125.572 kb on - strand, within PP_0120 at 125.572 kb on - strand, within PP_0120 at 125.727 kb on + strand, within PP_0120 at 125.727 kb on + strand, within PP_0120 at 125.728 kb on - strand, within PP_0120 at 125.728 kb on - strand, within PP_0120 at 125.807 kb on - strand, within PP_0120 at 126.031 kb on + strand at 126.032 kb on - strand at 126.088 kb on + strand at 126.088 kb on + strand at 126.088 kb on + strand at 126.088 kb on + strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.141 kb on + strand at 126.141 kb on + strand at 126.345 kb on + strand at 126.629 kb on + strand at 127.162 kb on - strand at 127.291 kb on - strand, within PP_0122 at 127.291 kb on - strand, within PP_0122 at 127.312 kb on - strand, within PP_0122 at 127.327 kb on + strand, within PP_0122 at 127.328 kb on - strand, within PP_0122 at 127.424 kb on + strand at 127.425 kb on - strand at 127.450 kb on + strand at 127.455 kb on + strand at 127.455 kb on + strand at 127.455 kb on + strand at 127.456 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Decanoic (C) remove 125,144 + -1.5 125,145 - +0.9 125,145 - +0.8 125,145 - -0.5 125,145 - -0.8 125,145 - -0.5 125,147 + +0.0 125,147 + +0.2 125,147 + -1.1 125,147 + -0.5 125,148 - +0.4 125,153 - -0.1 125,174 + +0.3 125,256 + -2.4 125,256 + -0.4 125,347 + PP_0120 0.18 -0.6 125,398 + PP_0120 0.24 -0.1 125,452 - PP_0120 0.30 -0.2 125,452 - PP_0120 0.30 -0.2 125,452 - PP_0120 0.30 -0.7 125,571 + +1.9 125,572 - PP_0120 0.43 -0.4 125,572 - PP_0120 0.43 +0.8 125,727 + PP_0120 0.60 -0.4 125,727 + PP_0120 0.60 -0.9 125,728 - PP_0120 0.60 -0.5 125,728 - PP_0120 0.60 +0.3 125,807 - PP_0120 0.69 -0.7 126,031 + +0.1 126,032 - -0.9 126,088 + +1.0 126,088 + -0.2 126,088 + -1.8 126,088 + -0.1 126,089 - -1.6 126,089 - +0.1 126,089 - +0.2 126,089 - +0.1 126,089 - +0.2 126,089 - -0.7 126,141 + -0.3 126,141 + -0.1 126,345 + -1.1 126,629 + +1.7 127,162 - -0.8 127,291 - PP_0122 0.45 +0.3 127,291 - PP_0122 0.45 +0.7 127,312 - PP_0122 0.53 -0.5 127,327 + PP_0122 0.58 -3.4 127,328 - PP_0122 0.58 +0.6 127,424 + -1.5 127,425 - -0.1 127,450 + -1.0 127,455 + -1.9 127,455 + -0.8 127,455 + -0.9 127,456 - +0.9
Or see this region's nucleotide sequence