Experiment: soil sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03355 and PS417_03360 overlap by 77 nucleotides PS417_03360 and PS417_03365 overlap by 4 nucleotides
PS417_03355: PS417_03355 - cation transporter, at 769,678 to 772,815
_03355
PS417_03360: PS417_03360 - histidine kinase, at 772,739 to 774,175
_03360
PS417_03365: PS417_03365 - transcriptional regulator, at 774,172 to 774,846
_03365
Position (kb) 772
773
774
775 Strain fitness (log2 ratio) -2
-1
0
1 at 772.404 kb on - strand, within PS417_03355 at 772.494 kb on + strand, within PS417_03355 at 772.740 kb on + strand at 772.741 kb on - strand at 772.741 kb on - strand at 772.741 kb on - strand at 772.774 kb on + strand at 772.775 kb on - strand at 773.028 kb on + strand, within PS417_03360 at 773.346 kb on + strand, within PS417_03360 at 773.346 kb on + strand, within PS417_03360 at 773.347 kb on - strand, within PS417_03360 at 773.689 kb on - strand, within PS417_03360 at 773.742 kb on - strand, within PS417_03360 at 773.745 kb on + strand, within PS417_03360 at 773.745 kb on + strand, within PS417_03360 at 773.746 kb on - strand, within PS417_03360 at 773.820 kb on + strand, within PS417_03360 at 773.820 kb on + strand, within PS417_03360 at 773.928 kb on + strand, within PS417_03360 at 773.932 kb on + strand, within PS417_03360 at 773.932 kb on + strand, within PS417_03360 at 773.932 kb on + strand, within PS417_03360 at 773.932 kb on + strand, within PS417_03360 at 774.087 kb on + strand at 774.163 kb on + strand at 774.557 kb on + strand, within PS417_03365 at 774.557 kb on + strand, within PS417_03365 at 774.557 kb on + strand, within PS417_03365 at 774.558 kb on - strand, within PS417_03365 at 774.767 kb on - strand, within PS417_03365 at 774.767 kb on - strand, within PS417_03365 at 774.774 kb on - strand, within PS417_03365 at 774.803 kb on + strand at 774.840 kb on + strand at 774.854 kb on + strand at 774.855 kb on - strand at 774.855 kb on - strand at 774.909 kb on - strand at 775.043 kb on + strand at 775.122 kb on + strand at 775.123 kb on - strand at 775.157 kb on + strand at 775.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 2; outgrowth in LB remove 772,404 - PS417_03355 0.87 -1.4 772,494 + PS417_03355 0.90 +0.3 772,740 + -0.4 772,741 - -1.2 772,741 - +0.4 772,741 - -0.4 772,774 + +0.5 772,775 - +0.7 773,028 + PS417_03360 0.20 -0.5 773,346 + PS417_03360 0.42 +0.1 773,346 + PS417_03360 0.42 -0.6 773,347 - PS417_03360 0.42 +0.6 773,689 - PS417_03360 0.66 -2.3 773,742 - PS417_03360 0.70 +0.3 773,745 + PS417_03360 0.70 -0.4 773,745 + PS417_03360 0.70 -1.5 773,746 - PS417_03360 0.70 -1.0 773,820 + PS417_03360 0.75 +1.3 773,820 + PS417_03360 0.75 +0.4 773,928 + PS417_03360 0.83 +0.2 773,932 + PS417_03360 0.83 -0.5 773,932 + PS417_03360 0.83 -0.6 773,932 + PS417_03360 0.83 +0.3 773,932 + PS417_03360 0.83 -0.4 774,087 + -0.1 774,163 + -1.2 774,557 + PS417_03365 0.57 -1.4 774,557 + PS417_03365 0.57 +0.7 774,557 + PS417_03365 0.57 +0.3 774,558 - PS417_03365 0.57 +0.3 774,767 - PS417_03365 0.88 +1.0 774,767 - PS417_03365 0.88 +0.2 774,774 - PS417_03365 0.89 +1.5 774,803 + +0.7 774,840 + -0.8 774,854 + -0.2 774,855 - -1.1 774,855 - +0.1 774,909 - -0.4 775,043 + -0.3 775,122 + +1.2 775,123 - -1.6 775,157 + -0.6 775,158 - -1.0
Or see this region's nucleotide sequence