Experiment: soil sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27425 and PS417_27430 are separated by 289 nucleotides PS417_27430 and PS417_27435 are separated by 512 nucleotides
PS417_27425: PS417_27425 - exopolyphosphatase, at 5,916,805 to 5,918,307
_27425
PS417_27430: PS417_27430 - hypothetical protein, at 5,918,597 to 5,919,832
_27430
PS417_27435: PS417_27435 - polyphosphate kinase, at 5,920,345 to 5,922,567
_27435
Position (kb) 5918
5919
5920 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5917.711 kb on + strand, within PS417_27425 at 5917.711 kb on + strand, within PS417_27425 at 5917.712 kb on - strand, within PS417_27425 at 5917.712 kb on - strand at 5917.712 kb on - strand, within PS417_27425 at 5917.721 kb on + strand, within PS417_27425 at 5918.043 kb on + strand, within PS417_27425 at 5918.044 kb on - strand, within PS417_27425 at 5918.316 kb on - strand at 5918.327 kb on + strand at 5918.327 kb on + strand at 5918.327 kb on + strand at 5918.327 kb on + strand at 5918.327 kb on + strand at 5918.327 kb on + strand at 5918.328 kb on - strand at 5918.328 kb on - strand at 5918.328 kb on - strand at 5918.328 kb on - strand at 5918.328 kb on - strand at 5918.379 kb on + strand at 5918.396 kb on - strand at 5918.484 kb on + strand at 5918.499 kb on + strand at 5918.517 kb on + strand at 5918.637 kb on - strand at 5918.695 kb on - strand at 5918.695 kb on - strand at 5918.695 kb on - strand at 5918.988 kb on + strand, within PS417_27430 at 5919.001 kb on - strand, within PS417_27430 at 5919.068 kb on + strand, within PS417_27430 at 5919.068 kb on + strand, within PS417_27430 at 5919.069 kb on - strand, within PS417_27430 at 5919.069 kb on - strand, within PS417_27430 at 5919.069 kb on - strand, within PS417_27430 at 5919.102 kb on - strand, within PS417_27430 at 5919.267 kb on - strand, within PS417_27430 at 5919.312 kb on + strand, within PS417_27430 at 5919.329 kb on - strand at 5919.487 kb on - strand, within PS417_27430 at 5919.487 kb on - strand, within PS417_27430 at 5919.524 kb on + strand, within PS417_27430 at 5919.524 kb on + strand, within PS417_27430 at 5919.525 kb on - strand, within PS417_27430 at 5919.662 kb on + strand, within PS417_27430 at 5919.749 kb on - strand at 5919.813 kb on + strand at 5919.856 kb on - strand at 5919.878 kb on + strand at 5919.879 kb on - strand at 5919.955 kb on + strand at 5919.955 kb on + strand at 5920.009 kb on + strand at 5920.009 kb on + strand at 5920.009 kb on + strand at 5920.009 kb on + strand at 5920.009 kb on + strand at 5920.010 kb on - strand at 5920.010 kb on - strand at 5920.029 kb on + strand at 5920.029 kb on + strand at 5920.030 kb on - strand at 5920.249 kb on - strand at 5920.252 kb on - strand at 5920.629 kb on - strand, within PS417_27435 at 5920.770 kb on - strand, within PS417_27435
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 2; outgrowth in LB remove 5,917,711 + PS417_27425 0.60 +0.1 5,917,711 + PS417_27425 0.60 -1.2 5,917,712 - PS417_27425 0.60 +1.7 5,917,712 - +0.0 5,917,712 - PS417_27425 0.60 -0.1 5,917,721 + PS417_27425 0.61 -0.6 5,918,043 + PS417_27425 0.82 +0.8 5,918,044 - PS417_27425 0.82 -1.9 5,918,316 - -0.8 5,918,327 + +0.6 5,918,327 + -0.9 5,918,327 + +0.4 5,918,327 + -0.1 5,918,327 + -0.1 5,918,327 + -0.4 5,918,328 - -0.2 5,918,328 - +0.8 5,918,328 - +2.8 5,918,328 - +0.7 5,918,328 - +0.8 5,918,379 + -0.0 5,918,396 - +0.5 5,918,484 + +0.5 5,918,499 + +0.6 5,918,517 + -2.5 5,918,637 - -0.0 5,918,695 - +1.8 5,918,695 - -0.7 5,918,695 - -0.6 5,918,988 + PS417_27430 0.32 +0.4 5,919,001 - PS417_27430 0.33 -0.1 5,919,068 + PS417_27430 0.38 -0.9 5,919,068 + PS417_27430 0.38 +1.9 5,919,069 - PS417_27430 0.38 -0.2 5,919,069 - PS417_27430 0.38 -0.7 5,919,069 - PS417_27430 0.38 -0.9 5,919,102 - PS417_27430 0.41 +1.0 5,919,267 - PS417_27430 0.54 +1.3 5,919,312 + PS417_27430 0.58 +1.9 5,919,329 - +2.0 5,919,487 - PS417_27430 0.72 -0.4 5,919,487 - PS417_27430 0.72 +3.9 5,919,524 + PS417_27430 0.75 -0.2 5,919,524 + PS417_27430 0.75 +0.1 5,919,525 - PS417_27430 0.75 +0.7 5,919,662 + PS417_27430 0.86 +0.4 5,919,749 - +0.5 5,919,813 + -0.1 5,919,856 - +0.2 5,919,878 + +0.7 5,919,879 - +0.0 5,919,955 + -0.5 5,919,955 + +0.8 5,920,009 + +0.1 5,920,009 + -0.4 5,920,009 + +0.8 5,920,009 + -1.2 5,920,009 + +0.1 5,920,010 - +2.4 5,920,010 - -0.1 5,920,029 + -0.7 5,920,029 + -2.1 5,920,030 - -1.3 5,920,249 - +0.8 5,920,252 - +0.7 5,920,629 - PS417_27435 0.13 -0.9 5,920,770 - PS417_27435 0.19 -2.1
Or see this region's nucleotide sequence