Experiment: soil sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01140 and PS417_01145 overlap by 4 nucleotides PS417_01145 and PS417_01150 are separated by 16 nucleotides PS417_01150 and PS417_01155 are separated by 241 nucleotides
PS417_01140: PS417_01140 - taurine ABC transporter permease, at 250,683 to 251,519
_01140
PS417_01145: PS417_01145 - taurine transporter ATP-binding subunit, at 251,516 to 252,295
_01145
PS417_01150: PS417_01150 - taurine ABC transporter substrate-binding protein, at 252,312 to 253,289
_01150
PS417_01155: PS417_01155 - glutamate--cysteine ligase, at 253,531 to 255,114
_01155
Position (kb) 252
253
254 Strain fitness (log2 ratio) -1
0
1 at 251.623 kb on - strand, within PS417_01145 at 252.237 kb on - strand at 252.284 kb on + strand at 252.284 kb on + strand at 252.303 kb on - strand at 252.340 kb on + strand at 252.340 kb on + strand at 252.341 kb on - strand at 252.341 kb on - strand at 252.349 kb on + strand at 252.419 kb on + strand, within PS417_01150 at 252.584 kb on - strand, within PS417_01150 at 252.757 kb on + strand, within PS417_01150 at 252.758 kb on - strand at 252.758 kb on - strand, within PS417_01150 at 252.758 kb on - strand, within PS417_01150 at 252.825 kb on + strand, within PS417_01150 at 253.185 kb on + strand, within PS417_01150 at 253.532 kb on + strand at 253.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 2; outgrowth in LB remove 251,623 - PS417_01145 0.14 -0.6 252,237 - -1.1 252,284 + -0.3 252,284 + -0.1 252,303 - +0.0 252,340 + -1.1 252,340 + -0.5 252,341 - +0.6 252,341 - -1.0 252,349 + -0.5 252,419 + PS417_01150 0.11 -1.5 252,584 - PS417_01150 0.28 -0.5 252,757 + PS417_01150 0.46 -0.7 252,758 - +0.5 252,758 - PS417_01150 0.46 -0.4 252,758 - PS417_01150 0.46 +0.3 252,825 + PS417_01150 0.52 -1.5 253,185 + PS417_01150 0.89 -1.2 253,532 + +0.5 253,533 - +0.4
Or see this region's nucleotide sequence