Strain Fitness in Pseudomonas simiae WCS417 around PS417_00765

Experiment: soil sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00760 and PS417_00765 are separated by 31 nucleotidesPS417_00765 and PS417_00770 are separated by 904 nucleotides PS417_00760: PS417_00760 - ShlB family hemolysin secretion/activation protein, at 161,475 to 163,196 _00760 PS417_00765: PS417_00765 - filamentous hemagglutinin, at 163,228 to 170,496 _00765 PS417_00770: PS417_00770 - autotransporter, at 171,401 to 173,989 _00770 Position (kb) 163 164 165 166 167 168 169 170 171Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 162.262 kb on + strand, within PS417_00760at 162.324 kb on + strand, within PS417_00760at 162.325 kb on - strand, within PS417_00760at 162.327 kb on + strand, within PS417_00760at 162.327 kb on + strand, within PS417_00760at 162.360 kb on + strand, within PS417_00760at 162.366 kb on + strand, within PS417_00760at 162.366 kb on + strandat 162.367 kb on - strand, within PS417_00760at 162.390 kb on + strand, within PS417_00760at 162.390 kb on + strand, within PS417_00760at 162.390 kb on + strand, within PS417_00760at 162.390 kb on + strand, within PS417_00760at 162.390 kb on + strand, within PS417_00760at 162.391 kb on - strand, within PS417_00760at 162.391 kb on - strand, within PS417_00760at 162.391 kb on - strand, within PS417_00760at 162.524 kb on + strand, within PS417_00760at 162.524 kb on + strand, within PS417_00760at 162.525 kb on - strand, within PS417_00760at 162.525 kb on - strand, within PS417_00760at 162.525 kb on - strand, within PS417_00760at 162.527 kb on + strand, within PS417_00760at 162.527 kb on + strand, within PS417_00760at 162.527 kb on + strand, within PS417_00760at 162.528 kb on - strand, within PS417_00760at 162.528 kb on - strand, within PS417_00760at 162.528 kb on - strand, within PS417_00760at 162.528 kb on - strand, within PS417_00760at 162.528 kb on - strand, within PS417_00760at 162.531 kb on + strand, within PS417_00760at 162.531 kb on + strand, within PS417_00760at 162.531 kb on + strand, within PS417_00760at 162.532 kb on - strand, within PS417_00760at 162.532 kb on - strand, within PS417_00760at 162.532 kb on - strand, within PS417_00760at 162.532 kb on - strand, within PS417_00760at 162.532 kb on - strand, within PS417_00760at 162.532 kb on - strand, within PS417_00760at 162.548 kb on + strand, within PS417_00760at 162.732 kb on + strand, within PS417_00760at 162.733 kb on - strand, within PS417_00760at 162.750 kb on + strand, within PS417_00760at 162.751 kb on - strand, within PS417_00760at 163.033 kb on - strandat 163.034 kb on + strandat 163.170 kb on + strandat 163.171 kb on - strandat 163.194 kb on + strandat 163.328 kb on + strandat 163.329 kb on - strandat 163.489 kb on + strandat 163.561 kb on + strandat 163.561 kb on + strandat 163.562 kb on - strandat 163.564 kb on - strandat 163.799 kb on - strandat 164.034 kb on + strand, within PS417_00765at 164.034 kb on + strand, within PS417_00765at 164.038 kb on + strand, within PS417_00765at 164.038 kb on + strand, within PS417_00765at 164.038 kb on + strand, within PS417_00765at 164.039 kb on - strand, within PS417_00765at 164.039 kb on - strand, within PS417_00765at 164.237 kb on + strand, within PS417_00765at 164.238 kb on - strand, within PS417_00765at 164.238 kb on - strand, within PS417_00765at 164.845 kb on - strand, within PS417_00765at 164.845 kb on - strand, within PS417_00765at 165.197 kb on + strand, within PS417_00765at 165.198 kb on - strand, within PS417_00765at 165.198 kb on - strand, within PS417_00765at 165.198 kb on - strand, within PS417_00765at 166.100 kb on + strand, within PS417_00765at 166.100 kb on + strand, within PS417_00765at 166.179 kb on + strand, within PS417_00765at 166.180 kb on - strand, within PS417_00765at 166.308 kb on - strand, within PS417_00765at 166.326 kb on + strand, within PS417_00765at 166.776 kb on + strand, within PS417_00765at 166.780 kb on + strandat 166.780 kb on + strand, within PS417_00765at 166.781 kb on - strand, within PS417_00765at 166.793 kb on - strand, within PS417_00765at 166.971 kb on - strand, within PS417_00765at 166.971 kb on - strand, within PS417_00765at 167.026 kb on + strand, within PS417_00765at 167.027 kb on - strand, within PS417_00765at 167.035 kb on + strand, within PS417_00765at 167.035 kb on + strand, within PS417_00765at 167.036 kb on - strand, within PS417_00765at 167.079 kb on - strand, within PS417_00765at 167.079 kb on - strand, within PS417_00765at 167.079 kb on - strand, within PS417_00765at 167.109 kb on + strand, within PS417_00765at 167.110 kb on - strand, within PS417_00765at 167.269 kb on + strand, within PS417_00765at 167.379 kb on + strand, within PS417_00765at 167.417 kb on - strand, within PS417_00765at 167.763 kb on + strand, within PS417_00765at 167.763 kb on + strand, within PS417_00765at 167.764 kb on - strand, within PS417_00765at 167.764 kb on - strand, within PS417_00765at 167.773 kb on + strand, within PS417_00765at 167.773 kb on + strand, within PS417_00765at 167.774 kb on - strand, within PS417_00765at 167.774 kb on - strand, within PS417_00765at 167.774 kb on - strand, within PS417_00765at 167.774 kb on - strand, within PS417_00765at 167.831 kb on - strand, within PS417_00765at 168.139 kb on + strand, within PS417_00765at 168.139 kb on + strand, within PS417_00765at 168.139 kb on + strand, within PS417_00765at 168.139 kb on + strand, within PS417_00765at 168.168 kb on - strand, within PS417_00765at 168.168 kb on - strand, within PS417_00765at 168.289 kb on + strand, within PS417_00765at 168.290 kb on - strand, within PS417_00765at 168.290 kb on - strand, within PS417_00765at 168.615 kb on + strand, within PS417_00765at 168.616 kb on - strand, within PS417_00765at 168.927 kb on + strand, within PS417_00765at 168.928 kb on - strand, within PS417_00765at 168.991 kb on + strand, within PS417_00765at 168.997 kb on + strand, within PS417_00765at 168.997 kb on + strand, within PS417_00765at 169.042 kb on + strand, within PS417_00765at 169.051 kb on + strand, within PS417_00765at 169.052 kb on - strand, within PS417_00765at 169.052 kb on - strand, within PS417_00765at 169.068 kb on + strand, within PS417_00765at 169.083 kb on + strand, within PS417_00765at 169.084 kb on - strand, within PS417_00765at 169.184 kb on - strand, within PS417_00765at 169.184 kb on - strand, within PS417_00765at 169.414 kb on - strand, within PS417_00765at 169.558 kb on + strand, within PS417_00765at 169.558 kb on + strand, within PS417_00765at 169.602 kb on + strandat 169.602 kb on + strand, within PS417_00765at 169.603 kb on - strand, within PS417_00765at 169.770 kb on + strandat 169.771 kb on - strandat 169.771 kb on - strandat 169.821 kb on + strandat 169.946 kb on + strandat 169.946 kb on + strandat 169.946 kb on + strandat 169.963 kb on + strandat 169.963 kb on + strandat 169.963 kb on + strandat 169.964 kb on - strandat 170.001 kb on + strandat 170.092 kb on + strandat 170.092 kb on + strandat 170.092 kb on + strandat 170.093 kb on - strandat 170.093 kb on - strandat 170.098 kb on + strandat 170.098 kb on + strandat 170.099 kb on - strandat 170.099 kb on - strandat 170.211 kb on - strandat 170.257 kb on - strandat 170.456 kb on - strandat 170.508 kb on + strandat 170.514 kb on + strandat 170.517 kb on + strandat 170.587 kb on + strandat 170.588 kb on - strandat 170.642 kb on + strandat 170.642 kb on + strandat 170.678 kb on - strandat 170.715 kb on + strandat 170.784 kb on - strandat 170.917 kb on + strandat 170.917 kb on + strandat 171.080 kb on + strandat 171.080 kb on + strandat 171.081 kb on - strandat 171.119 kb on + strandat 171.212 kb on + strandat 171.311 kb on + strandat 171.311 kb on + strandat 171.312 kb on - strandat 171.344 kb on - strandat 171.365 kb on - strandat 171.384 kb on - strandat 171.396 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 2; outgrowth in LB
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162,262 + PS417_00760 0.46 +0.6
162,324 + PS417_00760 0.49 +0.1
162,325 - PS417_00760 0.49 +0.1
162,327 + PS417_00760 0.49 +0.4
162,327 + PS417_00760 0.49 -0.2
162,360 + PS417_00760 0.51 -0.7
162,366 + PS417_00760 0.52 -0.4
162,366 + -0.4
162,367 - PS417_00760 0.52 -0.4
162,390 + PS417_00760 0.53 -1.0
162,390 + PS417_00760 0.53 +0.3
162,390 + PS417_00760 0.53 +0.7
162,390 + PS417_00760 0.53 -0.8
162,390 + PS417_00760 0.53 -2.4
162,391 - PS417_00760 0.53 +0.8
162,391 - PS417_00760 0.53 +0.3
162,391 - PS417_00760 0.53 +0.2
162,524 + PS417_00760 0.61 -0.7
162,524 + PS417_00760 0.61 +0.2
162,525 - PS417_00760 0.61 +1.4
162,525 - PS417_00760 0.61 +0.1
162,525 - PS417_00760 0.61 +0.2
162,527 + PS417_00760 0.61 -0.1
162,527 + PS417_00760 0.61 -0.1
162,527 + PS417_00760 0.61 -0.5
162,528 - PS417_00760 0.61 +2.1
162,528 - PS417_00760 0.61 -0.3
162,528 - PS417_00760 0.61 +0.4
162,528 - PS417_00760 0.61 -0.8
162,528 - PS417_00760 0.61 -1.0
162,531 + PS417_00760 0.61 +1.2
162,531 + PS417_00760 0.61 -0.5
162,531 + PS417_00760 0.61 +0.2
162,532 - PS417_00760 0.61 -0.2
162,532 - PS417_00760 0.61 -0.2
162,532 - PS417_00760 0.61 +0.3
162,532 - PS417_00760 0.61 -0.3
162,532 - PS417_00760 0.61 -1.5
162,532 - PS417_00760 0.61 -0.2
162,548 + PS417_00760 0.62 -0.9
162,732 + PS417_00760 0.73 -0.4
162,733 - PS417_00760 0.73 -0.1
162,750 + PS417_00760 0.74 -0.5
162,751 - PS417_00760 0.74 +0.4
163,033 - -0.4
163,034 + -0.7
163,170 + -3.2
163,171 - +0.0
163,194 + -2.8
163,328 + -1.2
163,329 - +1.9
163,489 + -0.2
163,561 + -1.3
163,561 + -0.7
163,562 - -1.7
163,564 - -0.5
163,799 - -3.8
164,034 + PS417_00765 0.11 +0.0
164,034 + PS417_00765 0.11 +0.9
164,038 + PS417_00765 0.11 +0.2
164,038 + PS417_00765 0.11 +1.2
164,038 + PS417_00765 0.11 +0.3
164,039 - PS417_00765 0.11 +0.4
164,039 - PS417_00765 0.11 +0.4
164,237 + PS417_00765 0.14 +1.1
164,238 - PS417_00765 0.14 -0.5
164,238 - PS417_00765 0.14 -0.8
164,845 - PS417_00765 0.22 -0.6
164,845 - PS417_00765 0.22 -0.5
165,197 + PS417_00765 0.27 +0.2
165,198 - PS417_00765 0.27 +0.5
165,198 - PS417_00765 0.27 -0.8
165,198 - PS417_00765 0.27 +1.0
166,100 + PS417_00765 0.40 -1.5
166,100 + PS417_00765 0.40 +0.2
166,179 + PS417_00765 0.41 -3.5
166,180 - PS417_00765 0.41 +0.5
166,308 - PS417_00765 0.42 -0.6
166,326 + PS417_00765 0.43 +1.0
166,776 + PS417_00765 0.49 +2.1
166,780 + +0.9
166,780 + PS417_00765 0.49 +1.0
166,781 - PS417_00765 0.49 -0.1
166,793 - PS417_00765 0.49 -0.5
166,971 - PS417_00765 0.51 +0.2
166,971 - PS417_00765 0.51 +0.7
167,026 + PS417_00765 0.52 +0.1
167,027 - PS417_00765 0.52 +0.7
167,035 + PS417_00765 0.52 -0.7
167,035 + PS417_00765 0.52 -1.3
167,036 - PS417_00765 0.52 +0.0
167,079 - PS417_00765 0.53 -0.8
167,079 - PS417_00765 0.53 -0.6
167,079 - PS417_00765 0.53 +0.2
167,109 + PS417_00765 0.53 +2.1
167,110 - PS417_00765 0.53 +0.3
167,269 + PS417_00765 0.56 -1.6
167,379 + PS417_00765 0.57 -0.7
167,417 - PS417_00765 0.58 -0.0
167,763 + PS417_00765 0.62 -0.6
167,763 + PS417_00765 0.62 +1.9
167,764 - PS417_00765 0.62 -0.3
167,764 - PS417_00765 0.62 +0.5
167,773 + PS417_00765 0.63 -1.2
167,773 + PS417_00765 0.63 -1.3
167,774 - PS417_00765 0.63 +0.3
167,774 - PS417_00765 0.63 -0.4
167,774 - PS417_00765 0.63 -0.8
167,774 - PS417_00765 0.63 +0.4
167,831 - PS417_00765 0.63 -0.4
168,139 + PS417_00765 0.68 +1.6
168,139 + PS417_00765 0.68 -1.3
168,139 + PS417_00765 0.68 -0.3
168,139 + PS417_00765 0.68 -0.3
168,168 - PS417_00765 0.68 -0.2
168,168 - PS417_00765 0.68 +0.5
168,289 + PS417_00765 0.70 -0.5
168,290 - PS417_00765 0.70 +0.6
168,290 - PS417_00765 0.70 +0.5
168,615 + PS417_00765 0.74 +0.7
168,616 - PS417_00765 0.74 +0.0
168,927 + PS417_00765 0.78 -0.5
168,928 - PS417_00765 0.78 +1.6
168,991 + PS417_00765 0.79 -0.1
168,997 + PS417_00765 0.79 -1.6
168,997 + PS417_00765 0.79 +0.7
169,042 + PS417_00765 0.80 +0.5
169,051 + PS417_00765 0.80 +0.4
169,052 - PS417_00765 0.80 -0.3
169,052 - PS417_00765 0.80 +0.1
169,068 + PS417_00765 0.80 +2.5
169,083 + PS417_00765 0.81 -0.5
169,084 - PS417_00765 0.81 +0.2
169,184 - PS417_00765 0.82 +1.8
169,184 - PS417_00765 0.82 +1.0
169,414 - PS417_00765 0.85 -1.7
169,558 + PS417_00765 0.87 -0.6
169,558 + PS417_00765 0.87 -0.4
169,602 + +1.5
169,602 + PS417_00765 0.88 -1.6
169,603 - PS417_00765 0.88 +0.1
169,770 + -0.0
169,771 - -0.5
169,771 - -0.1
169,821 + +0.1
169,946 + +0.6
169,946 + -0.6
169,946 + -0.1
169,963 + +1.2
169,963 + +0.9
169,963 + -1.0
169,964 - -2.0
170,001 + +0.2
170,092 + -0.1
170,092 + +1.6
170,092 + +0.5
170,093 - -0.7
170,093 - -1.5
170,098 + -1.2
170,098 + +0.6
170,099 - -2.1
170,099 - +0.7
170,211 - +0.2
170,257 - -0.4
170,456 - -0.1
170,508 + -2.9
170,514 + -1.2
170,517 + -2.4
170,587 + -0.9
170,588 - -0.0
170,642 + +0.4
170,642 + -0.4
170,678 - +0.7
170,715 + +0.7
170,784 - -0.6
170,917 + -0.4
170,917 + +0.5
171,080 + +0.3
171,080 + +1.0
171,081 - -0.3
171,119 + +1.6
171,212 + +0.0
171,311 + -0.6
171,311 + -0.6
171,312 - -0.3
171,344 - -0.1
171,365 - +0.9
171,384 - +2.3
171,396 + +1.5

Or see this region's nucleotide sequence