Strain Fitness in Agrobacterium fabrum C58 around Atu6190

Experiment: DL-glyceraldehyde (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6188 and Atu6189 are separated by 115 nucleotidesAtu6189 and Atu6190 are separated by 13 nucleotidesAtu6190 and Atu6191 are separated by 66 nucleotides Atu6188: Atu6188 - virA/G regulated protein, at 205,684 to 205,935 Atu6188 Atu6189: Atu6189 - protein secretion chaperone, at 206,051 to 206,242 Atu6189 Atu6190: Atu6190 - exported virulence protein, at 206,256 to 207,926 Atu6190 Atu6191: Atu6191 - virA/G regulated protein, at 207,993 to 210,047 Atu6191 Position (kb) 206 207 208Strain fitness (log2 ratio) -2 -1 0 1 2at 205.257 kb on - strandat 205.273 kb on - strandat 205.290 kb on - strandat 205.308 kb on - strandat 205.355 kb on + strandat 205.355 kb on + strandat 205.363 kb on - strandat 205.365 kb on - strandat 205.379 kb on + strandat 205.388 kb on - strandat 205.402 kb on - strandat 205.403 kb on + strandat 205.403 kb on + strandat 205.421 kb on - strandat 205.428 kb on + strandat 205.689 kb on - strandat 205.689 kb on - strandat 205.712 kb on + strand, within Atu6188at 205.719 kb on - strand, within Atu6188at 205.760 kb on + strand, within Atu6188at 205.765 kb on + strand, within Atu6188at 205.787 kb on - strand, within Atu6188at 205.866 kb on + strand, within Atu6188at 205.872 kb on + strand, within Atu6188at 205.877 kb on + strand, within Atu6188at 205.885 kb on - strand, within Atu6188at 205.887 kb on + strand, within Atu6188at 205.890 kb on - strand, within Atu6188at 205.895 kb on - strand, within Atu6188at 205.900 kb on - strand, within Atu6188at 205.901 kb on + strand, within Atu6188at 205.902 kb on + strand, within Atu6188at 205.907 kb on + strand, within Atu6188at 205.908 kb on - strand, within Atu6188at 205.917 kb on + strandat 205.944 kb on - strandat 205.981 kb on + strandat 205.989 kb on - strandat 205.989 kb on - strandat 205.989 kb on - strandat 205.989 kb on - strandat 205.991 kb on + strandat 205.999 kb on - strandat 206.000 kb on - strandat 206.080 kb on + strand, within Atu6189at 206.204 kb on - strand, within Atu6189at 206.359 kb on + strandat 206.378 kb on + strandat 206.386 kb on - strandat 206.410 kb on + strandat 206.502 kb on + strand, within Atu6190at 206.514 kb on + strand, within Atu6190at 206.514 kb on + strand, within Atu6190at 206.522 kb on - strand, within Atu6190at 206.522 kb on - strand, within Atu6190at 206.522 kb on - strand, within Atu6190at 206.549 kb on + strand, within Atu6190at 206.581 kb on + strand, within Atu6190at 206.589 kb on - strand, within Atu6190at 206.589 kb on - strand, within Atu6190at 206.596 kb on + strand, within Atu6190at 206.630 kb on + strand, within Atu6190at 206.662 kb on - strand, within Atu6190at 206.705 kb on + strand, within Atu6190at 206.708 kb on + strand, within Atu6190at 206.708 kb on + strand, within Atu6190at 206.731 kb on + strand, within Atu6190at 206.737 kb on - strand, within Atu6190at 206.744 kb on + strand, within Atu6190at 206.792 kb on - strand, within Atu6190at 206.805 kb on - strand, within Atu6190at 206.816 kb on + strand, within Atu6190at 206.876 kb on - strand, within Atu6190at 206.876 kb on - strand, within Atu6190at 206.944 kb on + strand, within Atu6190at 206.959 kb on - strand, within Atu6190at 206.964 kb on - strand, within Atu6190at 207.014 kb on + strand, within Atu6190at 207.024 kb on + strand, within Atu6190at 207.123 kb on - strand, within Atu6190at 207.150 kb on - strand, within Atu6190at 207.211 kb on - strand, within Atu6190at 207.220 kb on + strand, within Atu6190at 207.225 kb on + strand, within Atu6190at 207.225 kb on + strand, within Atu6190at 207.225 kb on + strand, within Atu6190at 207.230 kb on + strand, within Atu6190at 207.233 kb on - strand, within Atu6190at 207.233 kb on - strand, within Atu6190at 207.235 kb on + strand, within Atu6190at 207.298 kb on - strand, within Atu6190at 207.330 kb on + strand, within Atu6190at 207.364 kb on + strand, within Atu6190at 207.384 kb on + strand, within Atu6190at 207.384 kb on + strand, within Atu6190at 207.545 kb on - strand, within Atu6190at 207.593 kb on + strand, within Atu6190at 207.601 kb on - strand, within Atu6190at 207.628 kb on + strand, within Atu6190at 207.636 kb on - strand, within Atu6190at 207.728 kb on - strand, within Atu6190at 207.740 kb on + strand, within Atu6190at 207.740 kb on + strand, within Atu6190at 207.787 kb on + strandat 207.787 kb on + strandat 207.792 kb on + strandat 207.805 kb on - strandat 207.852 kb on + strandat 207.885 kb on + strandat 207.885 kb on + strandat 207.893 kb on - strandat 207.893 kb on - strandat 207.909 kb on + strandat 207.909 kb on + strandat 207.909 kb on + strandat 207.909 kb on + strandat 207.909 kb on + strandat 207.917 kb on - strandat 207.917 kb on - strandat 207.917 kb on - strandat 207.919 kb on - strandat 207.931 kb on - strandat 207.954 kb on + strandat 207.983 kb on + strandat 208.041 kb on - strandat 208.077 kb on + strandat 208.114 kb on + strandat 208.114 kb on + strandat 208.124 kb on + strandat 208.132 kb on - strandat 208.145 kb on - strandat 208.181 kb on + strandat 208.243 kb on - strand, within Atu6191at 208.339 kb on - strand, within Atu6191at 208.356 kb on + strand, within Atu6191at 208.387 kb on - strand, within Atu6191at 208.393 kb on + strand, within Atu6191at 208.393 kb on + strand, within Atu6191at 208.401 kb on - strand, within Atu6191at 208.401 kb on - strand, within Atu6191at 208.401 kb on - strand, within Atu6191at 208.529 kb on + strand, within Atu6191at 208.529 kb on + strand, within Atu6191at 208.529 kb on + strand, within Atu6191at 208.537 kb on - strand, within Atu6191at 208.537 kb on - strand, within Atu6191at 208.537 kb on - strand, within Atu6191at 208.537 kb on - strand, within Atu6191at 208.537 kb on - strand, within Atu6191at 208.537 kb on - strand, within Atu6191at 208.539 kb on + strand, within Atu6191at 208.573 kb on - strand, within Atu6191at 208.575 kb on + strand, within Atu6191at 208.656 kb on + strand, within Atu6191at 208.695 kb on + strand, within Atu6191at 208.695 kb on + strand, within Atu6191at 208.703 kb on - strand, within Atu6191at 208.703 kb on - strand, within Atu6191at 208.745 kb on + strand, within Atu6191at 208.753 kb on - strand, within Atu6191at 208.760 kb on + strand, within Atu6191at 208.811 kb on - strand, within Atu6191at 208.833 kb on + strand, within Atu6191at 208.864 kb on + strand, within Atu6191at 208.894 kb on - strand, within Atu6191at 208.895 kb on - strand, within Atu6191

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Per-strain Table

Position Strand Gene LocusTag Fraction DL-glyceraldehyde (C)
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205,257 - -0.0
205,273 - +0.2
205,290 - -0.1
205,308 - -0.0
205,355 + +0.4
205,355 + -0.3
205,363 - -0.2
205,365 - -0.1
205,379 + +0.1
205,388 - -1.3
205,402 - +1.5
205,403 + -0.3
205,403 + +0.3
205,421 - +1.1
205,428 + +0.3
205,689 - -0.8
205,689 - -0.1
205,712 + Atu6188 0.11 -0.0
205,719 - Atu6188 0.14 -1.0
205,760 + Atu6188 0.30 +0.3
205,765 + Atu6188 0.32 +0.3
205,787 - Atu6188 0.41 -0.9
205,866 + Atu6188 0.72 -0.5
205,872 + Atu6188 0.75 +0.0
205,877 + Atu6188 0.77 -0.2
205,885 - Atu6188 0.80 +0.5
205,887 + Atu6188 0.81 +0.0
205,890 - Atu6188 0.82 -0.5
205,895 - Atu6188 0.84 -0.4
205,900 - Atu6188 0.86 -0.1
205,901 + Atu6188 0.86 -0.3
205,902 + Atu6188 0.87 -0.1
205,907 + Atu6188 0.88 +0.3
205,908 - Atu6188 0.89 +0.1
205,917 + -0.2
205,944 - +0.0
205,981 + +0.8
205,989 - +0.3
205,989 - +0.0
205,989 - -0.1
205,989 - +0.6
205,991 + -0.2
205,999 - -0.2
206,000 - +0.9
206,080 + Atu6189 0.15 -0.0
206,204 - Atu6189 0.80 -0.2
206,359 + +0.0
206,378 + -0.1
206,386 - -0.0
206,410 + +0.1
206,502 + Atu6190 0.15 -0.2
206,514 + Atu6190 0.15 -0.3
206,514 + Atu6190 0.15 -0.2
206,522 - Atu6190 0.16 +1.2
206,522 - Atu6190 0.16 -1.3
206,522 - Atu6190 0.16 -0.5
206,549 + Atu6190 0.18 +0.4
206,581 + Atu6190 0.19 +0.8
206,589 - Atu6190 0.20 +0.1
206,589 - Atu6190 0.20 -0.0
206,596 + Atu6190 0.20 +0.3
206,630 + Atu6190 0.22 +0.3
206,662 - Atu6190 0.24 +0.3
206,705 + Atu6190 0.27 -0.4
206,708 + Atu6190 0.27 +0.2
206,708 + Atu6190 0.27 +0.0
206,731 + Atu6190 0.28 -0.2
206,737 - Atu6190 0.29 -1.5
206,744 + Atu6190 0.29 +1.1
206,792 - Atu6190 0.32 +1.9
206,805 - Atu6190 0.33 -1.3
206,816 + Atu6190 0.34 +0.7
206,876 - Atu6190 0.37 +0.1
206,876 - Atu6190 0.37 -0.7
206,944 + Atu6190 0.41 +0.2
206,959 - Atu6190 0.42 +0.4
206,964 - Atu6190 0.42 -0.4
207,014 + Atu6190 0.45 +0.4
207,024 + Atu6190 0.46 +0.1
207,123 - Atu6190 0.52 +0.4
207,150 - Atu6190 0.54 +0.3
207,211 - Atu6190 0.57 +0.9
207,220 + Atu6190 0.58 +0.3
207,225 + Atu6190 0.58 -1.1
207,225 + Atu6190 0.58 +0.3
207,225 + Atu6190 0.58 -0.1
207,230 + Atu6190 0.58 +0.3
207,233 - Atu6190 0.58 +0.3
207,233 - Atu6190 0.58 +0.3
207,235 + Atu6190 0.59 +0.1
207,298 - Atu6190 0.62 +0.5
207,330 + Atu6190 0.64 -0.2
207,364 + Atu6190 0.66 -0.2
207,384 + Atu6190 0.68 +0.0
207,384 + Atu6190 0.68 -2.3
207,545 - Atu6190 0.77 +0.3
207,593 + Atu6190 0.80 -0.3
207,601 - Atu6190 0.80 -0.2
207,628 + Atu6190 0.82 +0.4
207,636 - Atu6190 0.83 +0.7
207,728 - Atu6190 0.88 -0.4
207,740 + Atu6190 0.89 -0.7
207,740 + Atu6190 0.89 +0.1
207,787 + -0.3
207,787 + -0.3
207,792 + -0.1
207,805 - +0.4
207,852 + +0.3
207,885 + +0.3
207,885 + -1.1
207,893 - +0.6
207,893 - -0.3
207,909 + +0.0
207,909 + +0.3
207,909 + +0.0
207,909 + +0.1
207,909 + +1.0
207,917 - +0.5
207,917 - -0.0
207,917 - +0.6
207,919 - +0.3
207,931 - -0.3
207,954 + +0.4
207,983 + -0.6
208,041 - -0.7
208,077 + -1.6
208,114 + +0.4
208,114 + +0.9
208,124 + +0.8
208,132 - -0.1
208,145 - +0.5
208,181 + +1.1
208,243 - Atu6191 0.12 -0.4
208,339 - Atu6191 0.17 -0.1
208,356 + Atu6191 0.18 -0.6
208,387 - Atu6191 0.19 +0.5
208,393 + Atu6191 0.19 -0.0
208,393 + Atu6191 0.19 -0.1
208,401 - Atu6191 0.20 -0.5
208,401 - Atu6191 0.20 +0.0
208,401 - Atu6191 0.20 +0.2
208,529 + Atu6191 0.26 +0.7
208,529 + Atu6191 0.26 +0.1
208,529 + Atu6191 0.26 -0.3
208,537 - Atu6191 0.26 -0.4
208,537 - Atu6191 0.26 +0.4
208,537 - Atu6191 0.26 -0.5
208,537 - Atu6191 0.26 +0.1
208,537 - Atu6191 0.26 +0.0
208,537 - Atu6191 0.26 +0.3
208,539 + Atu6191 0.27 -0.5
208,573 - Atu6191 0.28 +0.6
208,575 + Atu6191 0.28 -0.2
208,656 + Atu6191 0.32 -0.2
208,695 + Atu6191 0.34 +0.3
208,695 + Atu6191 0.34 +0.1
208,703 - Atu6191 0.35 -0.5
208,703 - Atu6191 0.35 -0.2
208,745 + Atu6191 0.37 -0.4
208,753 - Atu6191 0.37 -1.1
208,760 + Atu6191 0.37 -0.2
208,811 - Atu6191 0.40 -0.3
208,833 + Atu6191 0.41 -0.3
208,864 + Atu6191 0.42 -0.4
208,894 - Atu6191 0.44 -0.1
208,895 - Atu6191 0.44 +0.0

Or see this region's nucleotide sequence