Strain Fitness in Escherichia coli BW25113 around b4238

Experiment: LB Anaerobic with Nalidixic 0.0000078125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB Anaerobic with Nalidixic 0.0000078125 mM
4,457,572	+	cybC	b4236	0.16	-0.6
4,457,632	+	cybC	b4236	0.33	-0.5
4,457,632	+	cybC	b4236	0.33	-0.8
4,457,653	+	cybC	b4236	0.38	-0.1
4,457,711	+	cybC	b4236	0.54	-0.1
4,457,788	-	cybC	b4236	0.75	-0.4
4,457,788	-	cybC	b4236	0.75	-1.2
4,457,806	+	cybC	b4236	0.80	-0.2
4,457,806	+	cybC	b4236	0.80	+1.2
4,457,831	-	cybC	b4236	0.87	-0.2
4,457,831	-	cybC	b4236	0.87	-0.1
4,457,834	-	cybC	b4236	0.88	-0.2
4,457,853	+				+0.1
4,457,853	+				-1.2
4,457,853	+				+0.2
4,457,903	-				-0.4
4,457,944	-				-0.8
4,457,944	-				-0.0
4,458,063	+	nrdG	b4237	0.30	-1.3
4,458,074	+	nrdG	b4237	0.32	-1.8
4,458,095	+	nrdG	b4237	0.37	-1.7
4,458,095	+	nrdG	b4237	0.37	-1.3
4,458,126	-	nrdG	b4237	0.44	-2.0
4,458,126	-	nrdG	b4237	0.44	-2.3
4,458,154	+	nrdG	b4237	0.50	-1.6
4,458,179	+	nrdG	b4237	0.55	-1.2
4,458,179	+	nrdG	b4237	0.55	-0.7
4,458,191	+	nrdG	b4237	0.58	-1.7
4,458,191	+	nrdG	b4237	0.58	-1.3
4,458,229	-	nrdG	b4237	0.66	-1.6
4,458,233	+	nrdG	b4237	0.67	-1.6
4,458,241	-	nrdG	b4237	0.68	-1.0
4,458,241	-	nrdG	b4237	0.68	-1.9
4,458,241	-	nrdG	b4237	0.68	-1.8
4,458,247	-	nrdG	b4237	0.70	-1.4
4,458,247	-	nrdG	b4237	0.70	-2.0
4,458,264	+	nrdG	b4237	0.73	-1.4
4,458,294	-	nrdG	b4237	0.80	-0.4
4,458,294	-	nrdG	b4237	0.80	-0.6
4,458,301	+	nrdG	b4237	0.81	-0.9
4,458,354	-				-2.0
4,458,365	+				-0.9
4,458,365	+				-1.4
4,458,373	-				-0.3
4,458,373	-				-1.1
4,458,373	-				-2.8
4,458,373	-				-2.1
4,458,373	-				-0.4
4,458,373	-				-0.4
4,458,432	+				-0.4
4,458,479	+				+0.1
4,458,479	+				-2.3
4,458,489	-				-0.2
4,458,494	-				-0.3
4,458,571	-				-0.9
4,458,571	-				-1.2
4,458,591	+				+0.5
4,458,613	+				-0.8
4,458,630	-				-1.6
4,458,630	-				-2.7
4,458,677	+				-0.1
4,458,677	+				-1.2
4,458,677	-				-0.7
4,458,698	-				-0.9
4,458,709	+				-2.8
4,458,763	-	nrdD	b4238	0.10	-0.7
4,458,768	+	nrdD	b4238	0.10	-1.6
4,458,779	+	nrdD	b4238	0.11	-1.6
4,458,935	-	nrdD	b4238	0.18	-0.3
4,458,971	-	nrdD	b4238	0.20	-1.2
4,458,994	-	nrdD	b4238	0.21	-1.0
4,458,994	-	nrdD	b4238	0.21	-1.1
4,459,004	-	nrdD	b4238	0.21	-1.9
4,459,011	+	nrdD	b4238	0.22	-0.8
4,459,019	-	nrdD	b4238	0.22	-1.9
4,459,019	-	nrdD	b4238	0.22	-0.9
4,459,053	+	nrdD	b4238	0.24	-1.7
4,459,053	+	nrdD	b4238	0.24	-1.0
4,459,063	-	nrdD	b4238	0.24	-1.2
4,459,063	-	nrdD	b4238	0.24	-0.7
4,459,066	-	nrdD	b4238	0.24	-0.7
4,459,091	+	nrdD	b4238	0.26	-0.9
4,459,130	-	nrdD	b4238	0.27	-2.7
4,459,157	+	nrdD	b4238	0.29	-1.3
4,459,158	-	nrdD	b4238	0.29	-1.7
4,459,173	+	nrdD	b4238	0.29	-1.3
4,459,202	-	nrdD	b4238	0.31	+0.9
4,459,269	+	nrdD	b4238	0.34	-1.0
4,459,269	+	nrdD	b4238	0.34	-1.5
4,459,282	+	nrdD	b4238	0.34	-0.2
4,459,282	+	nrdD	b4238	0.34	-1.6
4,459,285	+	nrdD	b4238	0.35	-1.9
4,459,285	+	nrdD	b4238	0.35	-1.5
4,459,307	+	nrdD	b4238	0.36	-0.9
4,459,307	-	nrdD	b4238	0.36	-1.3
4,459,332	+	nrdD	b4238	0.37	-2.8
4,459,332	+	nrdD	b4238	0.37	-2.0
4,459,334	+	nrdD	b4238	0.37	-0.9
4,459,352	+	nrdD	b4238	0.38	-2.0
4,459,447	+	nrdD	b4238	0.42	-0.7
4,459,447	+	nrdD	b4238	0.42	-1.4
4,459,455	-	nrdD	b4238	0.43	-0.6
4,459,455	-	nrdD	b4238	0.43	-1.1
4,459,455	-	nrdD	b4238	0.43	-2.2
4,459,455	-	nrdD	b4238	0.43	-1.3
4,459,627	-	nrdD	b4238	0.51	-1.1
4,459,743	+	nrdD	b4238	0.56	-1.7
4,459,751	-	nrdD	b4238	0.56	-1.0
4,459,751	-	nrdD	b4238	0.56	-2.2
4,459,809	+	nrdD	b4238	0.59	-1.0
4,459,886	-	nrdD	b4238	0.63	-0.8
4,459,888	+	nrdD	b4238	0.63	+0.1
4,459,896	+	nrdD	b4238	0.63	-1.6
4,459,913	+	nrdD	b4238	0.64	-2.0
4,459,922	+	nrdD	b4238	0.64	-0.1
4,459,929	+	nrdD	b4238	0.65	-0.6
4,459,937	+	nrdD	b4238	0.65	+0.8
4,459,942	-	nrdD	b4238	0.65	-1.0
4,459,942	-	nrdD	b4238	0.65	-0.0
4,459,947	+	nrdD	b4238	0.66	-1.6
4,459,949	-	nrdD	b4238	0.66	-0.2
4,459,957	-	nrdD	b4238	0.66	-0.7
4,459,982	-	nrdD	b4238	0.67	-2.3
4,460,013	-	nrdD	b4238	0.69	-1.3
4,460,029	-	nrdD	b4238	0.69	-1.4
4,460,029	-	nrdD	b4238	0.69	-2.3
4,460,061	+	nrdD	b4238	0.71	-0.8
4,460,069	-	nrdD	b4238	0.71	-1.4
4,460,076	+	nrdD	b4238	0.72	-0.8
4,460,076	+	nrdD	b4238	0.72	-1.1
4,460,100	+	nrdD	b4238	0.73	-1.6
4,460,168	-	nrdD	b4238	0.76	-1.7
4,460,186	+	nrdD	b4238	0.77	-1.0
4,460,196	+	nrdD	b4238	0.77	-2.0
4,460,196	+	nrdD	b4238	0.77	-0.9
4,460,218	+	nrdD	b4238	0.78	-2.5
4,460,225	+	nrdD	b4238	0.79	-0.2
4,460,225	+	nrdD	b4238	0.79	-0.3
4,460,238	-	nrdD	b4238	0.79	-0.6
4,460,243	+	nrdD	b4238	0.79	-0.3
4,460,260	-	nrdD	b4238	0.80	-0.7
4,460,360	-	nrdD	b4238	0.85	-1.3
4,460,371	+	nrdD	b4238	0.85	-0.5
4,460,371	+	nrdD	b4238	0.85	-0.8
4,460,387	+	nrdD	b4238	0.86	-1.1
4,460,447	-	nrdD	b4238	0.89	-1.1
4,460,447	-	nrdD	b4238	0.89	-1.0
4,460,504	-				-0.3
4,460,504	-				-1.9
4,460,542	-				+0.4
4,460,547	-				-0.3
4,460,554	+				-0.3
4,460,661	+				-1.7
4,460,820	+				-1.0
4,460,876	+				-0.7
4,460,891	-				+1.1
4,460,891	-				-0.7
4,461,038	+				+1.3
4,461,038	+				-0.3
4,461,080	+				+0.8
4,461,097	-				+0.8
4,461,128	+				+0.2
4,461,145	+				+0.2
4,461,190	-				+1.8
4,461,295	+	treC	b4239	0.13	+0.2
4,461,314	+	treC	b4239	0.14	+0.8
4,461,427	+	treC	b4239	0.21	+1.8
4,461,533	+	treC	b4239	0.28	+0.2
4,461,533	+	treC	b4239	0.28	+0.8