Strain Fitness in Pseudomonas putida KT2440 around PP_3656

Experiment: Hexanoic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Hexanoic (C)
4,151,055	+		PP_3655	0.46	-0.2
4,151,055	+		PP_3655	0.46	+0.2
4,151,056	-		PP_3655	0.47	+0.8
4,151,076	+		PP_3655	0.48	-0.7
4,151,121	+		PP_3655	0.51	-0.6
4,151,121	+		PP_3655	0.51	-0.5
4,151,121	+		PP_3655	0.51	-1.5
4,151,122	-		PP_3655	0.51	+0.2
4,151,283	-		PP_3655	0.63	-0.5
4,151,298	+		PP_3655	0.64	+0.9
4,151,298	+		PP_3655	0.64	-0.3
4,151,299	-		PP_3655	0.64	+0.1
4,151,299	-		PP_3655	0.64	+0.4
4,151,299	-		PP_3655	0.64	+0.1
4,151,343	+		PP_3655	0.67	-0.1
4,151,343	+		PP_3655	0.67	-2.2
4,151,467	+		PP_3655	0.76	+0.2
4,151,468	-		PP_3655	0.76	+0.8
4,151,518	-		PP_3655	0.79	+0.8
4,151,577	+		PP_3655	0.83	+0.4
4,151,577	+		PP_3655	0.83	+0.6
4,151,578	-		PP_3655	0.84	+0.3
4,151,578	-		PP_3655	0.84	-0.2
4,151,610	+		PP_3655	0.86	-1.2
4,151,610	+		PP_3655	0.86	+0.4
4,151,635	+		PP_3655	0.88	+0.8
4,151,658	+		PP_3655	0.89	+0.6
4,151,658	+		PP_3655	0.89	-0.4
4,151,659	-		PP_3655	0.89	-1.7
4,151,659	-		PP_3655	0.89	+0.1
4,151,659	-		PP_3655	0.89	-2.0
4,151,711	-				-0.0
4,151,736	+				-0.9
4,151,737	-				+0.6
4,151,766	+				-1.9
4,151,808	+				+0.3
4,151,958	+				-0.7
4,151,977	+				+0.5
4,152,016	+				+0.1
4,152,017	-				+1.5
4,152,039	-				+0.4
4,152,085	+				+1.4
4,152,085	+				-0.1
4,152,085	+				+0.6
4,152,085	+				+0.2
4,152,086	-				+0.3
4,152,086	-				+0.7
4,152,086	-				+0.5
4,152,086	-				+0.9
4,152,086	-				-0.2
4,152,093	-		PP_3656	0.10	+0.6
4,152,093	-		PP_3656	0.10	+1.4
4,152,176	+		PP_3656	0.17	+0.4
4,152,176	+		PP_3656	0.17	+0.1
4,152,177	-		PP_3656	0.17	+1.1
4,152,177	-		PP_3656	0.17	+0.9
4,152,251	-		PP_3656	0.23	+1.2
4,152,251	-		PP_3656	0.23	+0.3
4,152,290	+		PP_3656	0.26	+0.9
4,152,290	+		PP_3656	0.26	+0.3
4,152,290	+		PP_3656	0.26	-0.8
4,152,291	-		PP_3656	0.26	+1.5
4,152,316	+		PP_3656	0.28	+1.1
4,152,316	+		PP_3656	0.28	+0.8
4,152,316	+		PP_3656	0.28	+1.0
4,152,316	+		PP_3656	0.28	+0.9
4,152,317	-		PP_3656	0.28	+0.7
4,152,317	-		PP_3656	0.28	-0.6
4,152,317	-		PP_3656	0.28	-0.8
4,152,317	-		PP_3656	0.28	+0.7
4,152,317	-		PP_3656	0.28	+1.0
4,152,317	-		PP_3656	0.28	-0.6
4,152,317	-		PP_3656	0.28	+1.1
4,152,404	-		PP_3656	0.35	+0.2
4,152,412	+		PP_3656	0.36	+0.6
4,152,417	-		PP_3656	0.36	+0.4
4,152,417	-		PP_3656	0.36	-0.1
4,152,417	-		PP_3656	0.36	+0.7
4,152,420	+		PP_3656	0.36	+1.2
4,152,421	-		PP_3656	0.36	+1.1
4,152,527	+		PP_3656	0.45	+1.3
4,152,549	-		PP_3656	0.47	+0.5
4,152,622	+		PP_3656	0.52	+0.7
4,152,622	+		PP_3656	0.52	+1.2
4,152,622	+		PP_3656	0.52	+2.0
4,152,628	+		PP_3656	0.53	-0.3
4,152,628	+		PP_3656	0.53	+1.3
4,152,629	-		PP_3656	0.53	+2.0
4,152,629	-		PP_3656	0.53	-0.3
4,152,734	+		PP_3656	0.61	+0.0
4,152,734	+		PP_3656	0.61	-0.3
4,152,734	+		PP_3656	0.61	+0.7
4,152,735	-		PP_3656	0.61	+0.8
4,152,794	+		PP_3656	0.66	+0.9
4,152,794	+		PP_3656	0.66	-0.5
4,152,794	+		PP_3656	0.66	+0.9
4,152,794	+		PP_3656	0.66	-0.6
4,152,795	-		PP_3656	0.66	-0.4
4,152,795	-		PP_3656	0.66	+0.5
4,152,798	-		PP_3656	0.66	-0.2
4,152,808	-		PP_3656	0.67	+0.4
4,152,826	-		PP_3656	0.68	-0.5
4,152,835	-		PP_3656	0.69	+0.8
4,152,835	-		PP_3656	0.69	+0.9
4,152,852	-		PP_3656	0.71	+1.6
4,152,889	+		PP_3656	0.73	+1.6
4,152,889	+		PP_3656	0.73	+0.9
4,152,889	+		PP_3656	0.73	+0.2
4,153,016	+		PP_3656	0.84	+2.2
4,153,041	-		PP_3656	0.86	+0.0
4,153,106	-				+0.1
4,153,165	+				+0.8
4,153,217	+				+2.4
4,153,218	-				+1.4
4,153,294	+				+0.7
4,153,295	-				-1.1
4,153,306	-				+0.6
4,153,306	-				-1.6
4,153,306	-				-3.7
4,153,317	+				-0.0
4,153,432	-				-1.1
4,153,466	+		PP_3657	0.12	+0.2
4,153,466	+		PP_3657	0.12	+1.4
4,153,508	-		PP_3657	0.18	-0.9
4,153,538	+		PP_3657	0.23	+0.4
4,153,539	-		PP_3657	0.23	+0.4
4,153,542	+		PP_3657	0.23	+1.0
4,153,620	-		PP_3657	0.35	+0.8
4,153,620	-		PP_3657	0.35	+1.7
4,153,673	-		PP_3657	0.43	-0.7
4,153,673	-		PP_3657	0.43	-0.1
4,153,673	-		PP_3657	0.43	+0.4
4,153,755	+		PP_3657	0.55	+0.4
4,153,755	+		PP_3657	0.55	-0.2
4,153,755	+		PP_3657	0.55	+1.2
4,153,755	+		PP_3657	0.55	+1.1
4,153,756	-		PP_3657	0.55	-3.2
4,153,756	-		PP_3657	0.55	-2.3
4,153,756	-		PP_3657	0.55	+0.8
4,153,757	+		PP_3657	0.55	+0.2
4,153,757	+		PP_3657	0.55	+1.4
4,153,757	+		PP_3657	0.55	-0.4
4,153,758	-		PP_3657	0.55	+0.1
4,153,758	-		PP_3657	0.55	+1.4
4,153,758	-		PP_3657	0.55	+1.0
4,153,771	+		PP_3657	0.57	-0.3
4,153,771	+		PP_3657	0.57	+0.8
4,153,772	-		PP_3657	0.57	+0.7
4,153,772	-		PP_3657	0.57	-0.6
4,153,794	-		PP_3657	0.61	-0.0
4,153,817	+		PP_3657	0.64	+0.6
4,153,817	+		PP_3657	0.64	+0.1
4,153,820	+		PP_3657	0.65	+1.0
4,153,820	+		PP_3657	0.65	+1.2
4,153,821	-		PP_3657	0.65	-0.6
4,153,821	-		PP_3657	0.65	+0.1
4,153,902	+		PP_3657	0.77	+1.8
4,153,903	-		PP_3657	0.77	+0.8
4,153,956	+		PP_3657	0.85	+1.3
4,154,080	+				-0.0
4,154,106	+				+1.3
4,154,112	+				+0.6
4,154,112	+				+0.8
4,154,112	+				+0.8
4,154,112	+				+1.0
4,154,112	+				+0.7
4,154,112	+				+0.3
4,154,113	-				-0.1
4,154,113	-				-0.3
4,154,113	-				-0.6
4,154,113	-				+0.5
4,154,113	-				-0.8
4,154,113	-				-0.0
4,154,113	-				-1.7
4,154,113	-				-1.8
4,154,136	+				+1.6
4,154,137	-				-0.4
4,154,181	-				+0.4
4,154,181	-				+0.3