Strain Fitness in Pseudomonas putida KT2440 around PP_1780

Experiment: Hexanoic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Hexanoic (C)
1,987,889	+		PP_1779	0.29	+2.7
1,987,890	-		PP_1779	0.29	+3.2
1,987,965	+		PP_1779	0.35	+3.0
1,987,966	-		PP_1779	0.35	+3.2
1,987,966	-		PP_1779	0.35	+3.8
1,987,970	-		PP_1779	0.36	+2.7
1,987,970	-		PP_1779	0.36	+3.0
1,988,068	+		PP_1779	0.44	+3.2
1,988,069	-		PP_1779	0.44	+5.6
1,988,069	-		PP_1779	0.44	+4.1
1,988,133	-		PP_1779	0.49	+2.1
1,988,236	+		PP_1779	0.57	+1.8
1,988,237	-		PP_1779	0.57	+3.3
1,988,239	+		PP_1779	0.58	+3.6
1,988,337	+		PP_1779	0.66	+3.6
1,988,357	-		PP_1779	0.67	+3.2
1,988,424	-		PP_1779	0.73	+3.1
1,988,454	-		PP_1779	0.75	+2.9
1,988,454	-		PP_1779	0.75	+3.3
1,988,461	+		PP_1779	0.76	+3.4
1,988,499	+		PP_1779	0.79	+3.8
1,988,650	+				+2.5
1,988,651	-				+2.9
1,988,651	-				+3.0
1,988,651	-				+2.7
1,988,651	-				+2.8
1,988,651	-				+3.4
1,988,691	+				+4.1
1,988,691	+				+1.8
1,988,692	-				+2.7
1,988,766	+				+1.2
1,988,767	-				+0.6
1,988,787	+				-0.7
1,988,829	+				+1.6
1,988,829	+				+0.0
1,988,829	+				+3.7
1,988,829	+				+1.8
1,988,829	+				+1.4
1,988,829	+				+0.5
1,988,829	+				+2.4
1,988,830	-				+1.4
1,988,830	-				+1.3
1,988,830	-				+0.6
1,988,830	-				+0.9
1,988,830	-				+1.3
1,988,830	-				+1.3
1,988,830	-				+0.7
1,988,830	-				+0.5
1,988,831	+				+0.9
1,988,831	+				-0.7
1,988,831	+				+0.0
1,988,832	-				+1.2
1,988,832	-				+1.5
1,988,832	-				+0.4
1,988,832	-				+1.4
1,988,918	-				+1.2
1,989,029	+				+0.8
1,989,029	+				-0.5
1,989,029	+				+1.8
1,989,030	-				+1.1
1,989,128	+				-1.0
1,989,128	+				+0.4
1,989,133	+				+0.3
1,989,134	-				+0.6
1,989,134	-				+0.9
1,989,157	+				-2.4
1,989,233	+		PP_1780	0.10	+0.1
1,989,247	+		PP_1780	0.10	+1.2
1,989,247	+		PP_1780	0.10	+0.9
1,989,247	+		PP_1780	0.10	+0.9
1,989,247	+		PP_1780	0.10	+0.7
1,989,248	-		PP_1780	0.10	+0.5
1,989,248	-		PP_1780	0.10	-0.2
1,989,268	-		PP_1780	0.11	+1.9
1,989,268	-		PP_1780	0.11	+0.1
1,989,365	-		PP_1780	0.13	+0.7
1,989,382	+		PP_1780	0.13	+2.3
1,989,497	+		PP_1780	0.16	+2.8
1,989,557	+		PP_1780	0.17	+2.2
1,989,558	-		PP_1780	0.17	+1.0
1,989,763	+		PP_1780	0.21	+0.7
1,989,763	+		PP_1780	0.21	+0.9
1,989,763	+		PP_1780	0.21	+0.3
1,989,763	+		PP_1780	0.21	+1.1
1,989,764	-		PP_1780	0.21	+1.1
1,989,764	-		PP_1780	0.21	+1.8
1,989,764	-		PP_1780	0.21	+1.0
1,989,764	-		PP_1780	0.21	+0.6
1,989,767	+		PP_1780	0.21	+1.4
1,989,917	+		PP_1780	0.24	+0.5
1,989,917	+		PP_1780	0.24	+0.5
1,989,917	+		PP_1780	0.24	+1.9
1,989,918	-		PP_1780	0.24	+1.4
1,989,918	-		PP_1780	0.24	+1.1
1,989,918	-		PP_1780	0.24	+0.2
1,989,973	+		PP_1780	0.25	+1.3
1,989,973	+		PP_1780	0.25	+1.8
1,989,973	+		PP_1780	0.25	+0.6
1,989,979	-		PP_1780	0.26	+1.8
1,989,988	+		PP_1780	0.26	+0.9
1,990,000	+		PP_1780	0.26	-0.2
1,990,000	+		PP_1780	0.26	+2.2
1,990,000	+		PP_1780	0.26	+1.1
1,990,000	+		PP_1780	0.26	+0.7
1,990,000	+		PP_1780	0.26	+0.8
1,990,000	+		PP_1780	0.26	+0.9
1,990,002	+		PP_1780	0.26	+1.5
1,990,003	-		PP_1780	0.26	+0.7
1,990,032	+		PP_1780	0.27	+1.0
1,990,032	+		PP_1780	0.27	+1.2
1,990,032	+		PP_1780	0.27	+0.3
1,990,032	+		PP_1780	0.27	-0.1
1,990,033	-		PP_1780	0.27	+1.4
1,990,036	-		PP_1780	0.27	+1.1
1,990,036	-		PP_1780	0.27	+1.3
1,990,067	+		PP_1780	0.27	+2.0
1,990,091	+		PP_1780	0.28	+1.0
1,990,104	+		PP_1780	0.28	+1.0
1,990,104	+		PP_1780	0.28	+1.9
1,990,104	+		PP_1780	0.28	+0.8
1,990,182	+		PP_1780	0.30	+0.9
1,990,190	+		PP_1780	0.30	+0.7
1,990,190	+		PP_1780	0.30	+1.5
1,990,191	-		PP_1780	0.30	+0.5
1,990,191	-		PP_1780	0.30	+0.7
1,990,198	-		PP_1780	0.30	+1.0
1,990,198	-		PP_1780	0.30	+0.3
1,990,216	+		PP_1780	0.30	+2.3
1,990,217	-		PP_1780	0.30	+0.9
1,990,422	-		PP_1780	0.35	-0.7
1,990,422	-		PP_1780	0.35	+0.7
1,990,474	+				-0.6
1,990,501	+		PP_1780	0.36	+1.2
1,990,502	-		PP_1780	0.36	+1.0
1,990,514	+		PP_1780	0.37	+1.0
1,990,582	+		PP_1780	0.38	+1.6
1,990,583	-		PP_1780	0.38	+0.3
1,990,668	+		PP_1780	0.40	+1.1
1,990,668	+		PP_1780	0.40	+1.3
1,990,669	-		PP_1780	0.40	+0.5
1,990,669	-		PP_1780	0.40	-1.6
1,990,669	-		PP_1780	0.40	+0.5
1,990,669	-		PP_1780	0.40	+1.0
1,990,669	-		PP_1780	0.40	+2.4
1,990,702	+		PP_1780	0.41	+0.7
1,990,702	+		PP_1780	0.41	+0.8
1,991,021	+		PP_1780	0.47	+0.5
1,991,021	+		PP_1780	0.47	+0.3
1,991,022	-		PP_1780	0.47	+1.1
1,991,022	-		PP_1780	0.47	-0.0
1,991,022	-		PP_1780	0.47	-1.2
1,991,022	-		PP_1780	0.47	+1.8
1,991,022	-		PP_1780	0.47	+1.8
1,991,124	+		PP_1780	0.49	+1.1
1,991,124	+		PP_1780	0.49	+2.1
1,991,125	-		PP_1780	0.49	+0.3
1,991,125	-		PP_1780	0.49	+0.9
1,991,125	-		PP_1780	0.49	+1.4
1,991,259	+		PP_1780	0.52	+1.0
1,991,259	+		PP_1780	0.52	+0.8
1,991,259	+		PP_1780	0.52	+1.7
1,991,314	-		PP_1780	0.53	+1.7
1,991,352	+		PP_1780	0.54	+1.4
1,991,352	+		PP_1780	0.54	+1.6
1,991,353	-		PP_1780	0.54	+1.1
1,991,353	-		PP_1780	0.54	+1.5
1,991,540	+		PP_1780	0.58	+1.2
1,991,584	+		PP_1780	0.59	+0.2
1,991,584	+		PP_1780	0.59	+1.2
1,991,585	-		PP_1780	0.59	+1.6
1,991,585	-		PP_1780	0.59	+1.7
1,991,585	-				+1.7
1,991,639	+		PP_1780	0.60	+0.5
1,991,640	-		PP_1780	0.60	+2.7
1,991,640	-		PP_1780	0.60	+1.3
1,991,644	+		PP_1780	0.60	+1.6
1,991,644	+		PP_1780	0.60	+1.3
1,991,644	+		PP_1780	0.60	+1.4
1,991,645	-		PP_1780	0.60	+0.1
1,991,645	-		PP_1780	0.60	+1.7
1,991,645	-		PP_1780	0.60	+2.2
1,991,645	-		PP_1780	0.60	+1.2
1,991,693	+		PP_1780	0.61	-0.0
1,991,693	+		PP_1780	0.61	-0.1
1,991,801	+		PP_1780	0.63	+2.1
1,991,916	+		PP_1780	0.66	+1.9
1,992,018	+		PP_1780	0.68	+1.0
1,992,080	+		PP_1780	0.69	+0.4
1,992,080	+		PP_1780	0.69	+0.0
1,992,081	-		PP_1780	0.69	+1.1
1,992,116	+		PP_1780	0.70	+1.4
1,992,117	-		PP_1780	0.70	+2.7
1,992,117	-		PP_1780	0.70	-0.1
1,992,117	-		PP_1780	0.70	+0.3
1,992,293	+		PP_1780	0.74	+1.5
1,992,328	+		PP_1780	0.74	+1.1
1,992,431	+		PP_1780	0.76	+0.0
1,992,431	+		PP_1780	0.76	+0.5
1,992,431	+		PP_1780	0.76	+1.5
1,992,432	-		PP_1780	0.76	+1.4
1,992,432	-		PP_1780	0.76	+1.6
1,992,432	-		PP_1780	0.76	+1.2
1,992,505	+		PP_1780	0.78	+0.7
1,992,505	+		PP_1780	0.78	+0.8
1,992,537	+		PP_1780	0.79	+1.0
1,992,538	-		PP_1780	0.79	+2.0
1,992,539	+		PP_1780	0.79	+0.9
1,992,539	+		PP_1780	0.79	+1.1
1,992,539	+		PP_1780	0.79	+1.8
1,992,539	+		PP_1780	0.79	+1.4
1,992,540	-		PP_1780	0.79	+0.3
1,992,540	-		PP_1780	0.79	+1.6
1,992,540	-		PP_1780	0.79	+1.3
1,992,540	-		PP_1780	0.79	+1.3
1,992,540	-		PP_1780	0.79	+0.6
1,992,574	-		PP_1780	0.79	+1.4
1,992,574	-		PP_1780	0.79	+0.3
1,992,574	-		PP_1780	0.79	+2.2
1,992,607	-		PP_1780	0.80	+1.1
1,992,764	+		PP_1780	0.83	+2.3
1,992,765	-		PP_1780	0.83	-0.4
1,992,797	+		PP_1780	0.84	+0.9
1,992,797	+		PP_1780	0.84	+1.2
1,992,798	-		PP_1780	0.84	+0.9
1,992,807	+		PP_1780	0.84	+0.5
1,992,807	+		PP_1780	0.84	+1.5
1,992,808	-		PP_1780	0.84	+1.8
1,992,808	-		PP_1780	0.84	+2.0
1,992,855	-		PP_1780	0.85	+0.2
1,992,855	-		PP_1780	0.85	+0.3
1,992,956	+		PP_1780	0.87	+0.8
1,992,957	-		PP_1780	0.87	+2.0
1,992,968	+		PP_1780	0.88	+1.3
1,992,969	-		PP_1780	0.88	+1.2
1,993,007	+		PP_1780	0.88	-0.4
1,993,008	-		PP_1780	0.88	+1.9
1,993,017	-		PP_1780	0.89	+1.7
1,993,085	-				+0.6
1,993,221	+				+0.6
1,993,221	+				+1.2
1,993,222	-				+1.0
1,993,222	-				+1.6
1,993,273	+				+0.5
1,993,274	-				+0.0
1,993,343	-				+2.3
1,993,359	+				+1.1
1,993,362	+				+0.8
1,993,362	+				+0.7
1,993,363	-				+1.1
1,993,363	-				+2.3
1,993,363	-				+1.2
1,993,363	-				+1.9
1,993,363	-				+1.6
1,993,390	+				+0.7
1,993,390	+				+0.5
1,993,390	+				+2.0
1,993,390	+				-0.6
1,993,390	+				+0.4
1,993,391	-				+1.1
1,993,391	-				+0.8
1,993,466	-				+0.8
1,993,523	+				-1.2
1,993,524	-				+0.4
1,993,539	-				+0.4
1,993,539	-				-0.3
1,993,539	-				+1.0
1,993,539	-				-2.3
1,993,568	+				-0.8
1,993,629	-				-0.7
1,993,637	+				+0.1
1,993,637	+				+1.7
1,993,638	-				-3.1
1,993,638	-				+0.4
1,993,638	-				-0.6
1,993,651	+				-0.5
1,993,662	-				-2.6
1,993,700	+				-0.2
1,993,700	+				-0.3
1,993,744	+				-0.2
1,993,790	+		PP_1781	0.12	+0.4
1,993,791	-		PP_1781	0.12	-0.3
1,993,800	+		PP_1781	0.13	-1.1
1,993,801	-		PP_1781	0.13	+0.1
1,993,801	-		PP_1781	0.13	+0.2
1,993,801	-		PP_1781	0.13	+0.1
1,993,801	-		PP_1781	0.13	+0.5
1,993,801	-		PP_1781	0.13	-0.7
1,993,865	+		PP_1781	0.19	-2.1
1,993,865	+		PP_1781	0.19	+0.1
1,993,866	-		PP_1781	0.19	+0.6
1,993,874	+		PP_1781	0.20	-0.8
1,993,874	+		PP_1781	0.20	-0.3
1,993,874	+		PP_1781	0.20	+0.1
1,993,874	+		PP_1781	0.20	-0.8
1,993,874	+		PP_1781	0.20	+0.1
1,993,874	+		PP_1781	0.20	+0.2
1,993,874	+		PP_1781	0.20	+0.7
1,993,875	-		PP_1781	0.20	+0.4
1,993,875	-		PP_1781	0.20	-0.6
1,993,951	+		PP_1781	0.27	-0.1
1,993,952	-		PP_1781	0.27	-0.3
1,993,954	+		PP_1781	0.27	+1.7
1,993,970	+		PP_1781	0.28	+0.6
1,993,970	+		PP_1781	0.28	-0.2
1,993,970	+		PP_1781	0.28	+0.3
1,993,970	+		PP_1781	0.28	+1.7
1,993,970	+		PP_1781	0.28	-1.4
1,993,970	+		PP_1781	0.28	+0.5
1,993,971	-		PP_1781	0.29	+0.2
1,993,971	-		PP_1781	0.29	-0.3
1,993,971	-		PP_1781	0.29	-0.1
1,993,971	-		PP_1781	0.29	+0.1
1,993,984	-		PP_1781	0.30	-0.2
1,994,031	+		PP_1781	0.34	+0.1
1,994,031	+		PP_1781	0.34	-0.0
1,994,032	-		PP_1781	0.34	+1.1
1,994,084	-		PP_1781	0.39	-0.1
1,994,084	-		PP_1781	0.39	-1.9
1,994,084	-		PP_1781	0.39	+0.5
1,994,101	-		PP_1781	0.40	-0.2
1,994,101	-		PP_1781	0.40	+0.5
1,994,101	-		PP_1781	0.40	-1.0
1,994,102	+		PP_1781	0.41	+0.3
1,994,102	+		PP_1781	0.41	+0.2
1,994,103	-		PP_1781	0.41	+1.0
1,994,103	-		PP_1781	0.41	+0.7
1,994,103	-		PP_1781	0.41	+1.6
1,994,103	-				+1.1
1,994,103	-		PP_1781	0.41	+0.4
1,994,103	-		PP_1781	0.41	+0.3
1,994,103	-		PP_1781	0.41	+0.0
1,994,150	+		PP_1781	0.45	-0.2
1,994,150	+				-1.5
1,994,150	+		PP_1781	0.45	-2.6
1,994,151	-		PP_1781	0.45	-0.1
1,994,151	-		PP_1781	0.45	+0.2
1,994,168	+		PP_1781	0.47	+0.3
1,994,168	+		PP_1781	0.47	+0.5
1,994,168	+		PP_1781	0.47	+0.7
1,994,169	-		PP_1781	0.47	-0.1
1,994,169	-		PP_1781	0.47	+0.2
1,994,246	+		PP_1781	0.54	-0.3
1,994,246	+		PP_1781	0.54	+0.1
1,994,246	+				+2.4
1,994,246	+		PP_1781	0.54	-2.0
1,994,246	+		PP_1781	0.54	-0.2
1,994,247	-		PP_1781	0.54	-0.7
1,994,254	+		PP_1781	0.55	+0.4
1,994,254	+		PP_1781	0.55	+0.2
1,994,254	+		PP_1781	0.55	+0.0
1,994,254	+		PP_1781	0.55	-0.1
1,994,255	-		PP_1781	0.55	+1.1
1,994,255	-		PP_1781	0.55	-0.2
1,994,255	-		PP_1781	0.55	-0.5
1,994,321	-		PP_1781	0.61	-0.1
1,994,348	+		PP_1781	0.63	+0.7
1,994,348	+		PP_1781	0.63	+0.4
1,994,367	-		PP_1781	0.65	-1.4
1,994,375	+		PP_1781	0.66	-0.0
1,994,375	+		PP_1781	0.66	+0.5
1,994,396	+		PP_1781	0.68	-2.5
1,994,396	+		PP_1781	0.68	-1.0
1,994,397	-		PP_1781	0.68	+1.5
1,994,425	-		PP_1781	0.70	-1.5
1,994,431	-		PP_1781	0.71	-0.5
1,994,431	-		PP_1781	0.71	+0.0
1,994,431	-		PP_1781	0.71	-0.3
1,994,440	+		PP_1781	0.72	-0.7
1,994,447	+		PP_1781	0.72	-0.4
1,994,449	+		PP_1781	0.72	+0.7
1,994,449	+		PP_1781	0.72	+0.5
1,994,449	+		PP_1781	0.72	+0.5
1,994,449	+		PP_1781	0.72	-0.4
1,994,450	-		PP_1781	0.73	-0.3
1,994,526	-		PP_1781	0.80	+0.5
1,994,526	-		PP_1781	0.80	+0.3
1,994,547	+		PP_1781	0.81	+1.3
1,994,547	+		PP_1781	0.81	-0.4
1,994,547	+		PP_1781	0.81	+1.4
1,994,548	-		PP_1781	0.82	+0.3