Strain Fitness in Agrobacterium fabrum C58 around Atu0211

Experiment: 1,4-Butanediol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0209 and Atu0210 are separated by 364 nucleotidesAtu0210 and Atu0211 are separated by 18 nucleotidesAtu0211 and Atu0212 are separated by 95 nucleotidesAtu0212 and Atu0213 are separated by 191 nucleotides Atu0209: Atu0209 - hypothetical protein, at 213,782 to 214,888 Atu0209 Atu0210: Atu0210 - hypothetical protein, at 215,253 to 215,597 Atu0210 Atu0211: Atu0211 - hypothetical protein, at 215,616 to 216,467 Atu0211 Atu0212: Atu0212 - hypothetical protein, at 216,563 to 216,922 Atu0212 Atu0213: Atu0213 - nicotinate phosphoribosyltransferase, at 217,114 to 218,418 Atu0213 Position (kb) 215 216 217Strain fitness (log2 ratio) -2 -1 0 1 2at 214.666 kb on + strand, within Atu0209at 214.676 kb on - strand, within Atu0209at 214.700 kb on - strand, within Atu0209at 214.700 kb on - strand, within Atu0209at 214.718 kb on + strand, within Atu0209at 214.718 kb on + strand, within Atu0209at 214.726 kb on - strand, within Atu0209at 214.726 kb on - strand, within Atu0209at 214.750 kb on + strand, within Atu0209at 214.753 kb on - strand, within Atu0209at 214.760 kb on - strand, within Atu0209at 214.771 kb on + strand, within Atu0209at 214.779 kb on - strandat 214.796 kb on + strandat 214.804 kb on - strandat 214.883 kb on - strandat 215.076 kb on - strandat 215.088 kb on + strandat 215.088 kb on + strandat 215.096 kb on - strandat 215.096 kb on - strandat 215.130 kb on - strandat 215.147 kb on + strandat 215.154 kb on + strandat 215.155 kb on - strandat 215.155 kb on - strandat 215.155 kb on - strandat 215.162 kb on - strandat 215.186 kb on + strandat 215.190 kb on + strandat 215.214 kb on + strandat 215.236 kb on + strandat 215.249 kb on - strandat 215.287 kb on - strandat 215.289 kb on - strand, within Atu0210at 215.298 kb on + strand, within Atu0210at 215.310 kb on + strand, within Atu0210at 215.315 kb on + strand, within Atu0210at 215.333 kb on + strand, within Atu0210at 215.334 kb on + strand, within Atu0210at 215.342 kb on - strand, within Atu0210at 215.451 kb on + strand, within Atu0210at 215.458 kb on + strand, within Atu0210at 215.466 kb on - strand, within Atu0210at 215.620 kb on - strandat 215.640 kb on - strandat 215.650 kb on - strandat 215.652 kb on + strandat 215.655 kb on - strandat 215.677 kb on + strandat 215.685 kb on - strandat 215.685 kb on - strandat 215.720 kb on + strand, within Atu0211at 215.732 kb on + strand, within Atu0211at 215.769 kb on + strand, within Atu0211at 215.781 kb on + strand, within Atu0211at 215.786 kb on + strand, within Atu0211at 215.855 kb on - strand, within Atu0211at 215.918 kb on - strand, within Atu0211at 215.918 kb on - strand, within Atu0211at 215.936 kb on + strand, within Atu0211at 215.944 kb on - strand, within Atu0211at 215.989 kb on - strand, within Atu0211at 215.990 kb on - strand, within Atu0211at 216.039 kb on - strand, within Atu0211at 216.062 kb on + strand, within Atu0211at 216.157 kb on - strand, within Atu0211at 216.236 kb on - strand, within Atu0211at 216.497 kb on - strandat 216.515 kb on + strandat 216.533 kb on - strandat 216.533 kb on - strandat 216.608 kb on + strand, within Atu0212at 216.718 kb on + strand, within Atu0212at 216.776 kb on - strand, within Atu0212at 216.806 kb on - strand, within Atu0212at 216.812 kb on + strand, within Atu0212at 216.883 kb on + strand, within Atu0212at 216.995 kb on + strandat 217.003 kb on - strandat 217.013 kb on - strandat 217.049 kb on - strandat 217.104 kb on - strandat 217.154 kb on - strandat 217.275 kb on + strand, within Atu0213at 217.275 kb on + strand, within Atu0213at 217.275 kb on + strand, within Atu0213at 217.275 kb on + strand, within Atu0213at 217.283 kb on - strand, within Atu0213at 217.283 kb on - strand, within Atu0213at 217.310 kb on + strand, within Atu0213at 217.310 kb on + strand, within Atu0213at 217.346 kb on + strand, within Atu0213at 217.431 kb on + strand, within Atu0213

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Per-strain Table

Position Strand Gene LocusTag Fraction 1,4-Butanediol (C)
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214,666 + Atu0209 0.80 -0.7
214,676 - Atu0209 0.81 -2.0
214,700 - Atu0209 0.83 +0.6
214,700 - Atu0209 0.83 +0.0
214,718 + Atu0209 0.85 +0.2
214,718 + Atu0209 0.85 -0.7
214,726 - Atu0209 0.85 -0.6
214,726 - Atu0209 0.85 +0.3
214,750 + Atu0209 0.87 +0.6
214,753 - Atu0209 0.88 -0.0
214,760 - Atu0209 0.88 +0.1
214,771 + Atu0209 0.89 -0.3
214,779 - +0.1
214,796 + +1.0
214,804 - -0.3
214,883 - +0.3
215,076 - +0.5
215,088 + +0.2
215,088 + -0.1
215,096 - +1.6
215,096 - +0.4
215,130 - +0.6
215,147 + -0.3
215,154 + +0.4
215,155 - -0.0
215,155 - -0.1
215,155 - -1.2
215,162 - +0.1
215,186 + -0.1
215,190 + +0.8
215,214 + +0.0
215,236 + -0.1
215,249 - -0.7
215,287 - -0.1
215,289 - Atu0210 0.10 -0.2
215,298 + Atu0210 0.13 -0.1
215,310 + Atu0210 0.17 +0.3
215,315 + Atu0210 0.18 +0.2
215,333 + Atu0210 0.23 +0.6
215,334 + Atu0210 0.23 -1.6
215,342 - Atu0210 0.26 -1.0
215,451 + Atu0210 0.57 +0.4
215,458 + Atu0210 0.59 -0.1
215,466 - Atu0210 0.62 +1.6
215,620 - +0.3
215,640 - +0.2
215,650 - -0.6
215,652 + +0.4
215,655 - -0.8
215,677 + -0.2
215,685 - +0.0
215,685 - +1.6
215,720 + Atu0211 0.12 +1.1
215,732 + Atu0211 0.14 -0.1
215,769 + Atu0211 0.18 +0.4
215,781 + Atu0211 0.19 -0.3
215,786 + Atu0211 0.20 -0.6
215,855 - Atu0211 0.28 +0.3
215,918 - Atu0211 0.35 -0.0
215,918 - Atu0211 0.35 +2.4
215,936 + Atu0211 0.38 +0.1
215,944 - Atu0211 0.38 -0.1
215,989 - Atu0211 0.44 +1.2
215,990 - Atu0211 0.44 +0.3
216,039 - Atu0211 0.50 +1.3
216,062 + Atu0211 0.52 +0.5
216,157 - Atu0211 0.63 +0.2
216,236 - Atu0211 0.73 +1.4
216,497 - -0.1
216,515 + +0.5
216,533 - -0.3
216,533 - -0.3
216,608 + Atu0212 0.12 -0.1
216,718 + Atu0212 0.43 -0.4
216,776 - Atu0212 0.59 +0.5
216,806 - Atu0212 0.68 -0.0
216,812 + Atu0212 0.69 +0.1
216,883 + Atu0212 0.89 -0.2
216,995 + -0.4
217,003 - +0.1
217,013 - -1.0
217,049 - +0.1
217,104 - -0.6
217,154 - -0.7
217,275 + Atu0213 0.12 +0.1
217,275 + Atu0213 0.12 -0.8
217,275 + Atu0213 0.12 +0.5
217,275 + Atu0213 0.12 +0.8
217,283 - Atu0213 0.13 -0.1
217,283 - Atu0213 0.13 +0.1
217,310 + Atu0213 0.15 +0.0
217,310 + Atu0213 0.15 -0.1
217,346 + Atu0213 0.18 +0.2
217,431 + Atu0213 0.24 +1.0

Or see this region's nucleotide sequence