Strain Fitness in Agrobacterium fabrum C58 around Atu8047

Experiment: 1,4-Butanediol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5085 and Atu8047 are separated by 108 nucleotidesAtu8047 and Atu5086 are separated by 303 nucleotides Atu5085: Atu5085 - metallo-beta-lactamase, at 86,925 to 87,884 Atu5085 Atu8047: Atu8047 - hypothetical protein, at 87,993 to 88,262 Atu8047 Atu5086: Atu5086 - hypothetical protein, at 88,566 to 90,008 Atu5086 Position (kb) 87 88 89Strain fitness (log2 ratio) -1 0 1 2at 87.002 kb on - strandat 87.024 kb on - strand, within Atu5085at 87.025 kb on - strand, within Atu5085at 87.061 kb on + strand, within Atu5085at 87.064 kb on + strand, within Atu5085at 87.069 kb on - strand, within Atu5085at 87.071 kb on + strand, within Atu5085at 87.072 kb on - strand, within Atu5085at 87.078 kb on + strand, within Atu5085at 87.078 kb on + strand, within Atu5085at 87.079 kb on - strand, within Atu5085at 87.079 kb on - strand, within Atu5085at 87.080 kb on - strand, within Atu5085at 87.081 kb on - strand, within Atu5085at 87.099 kb on - strand, within Atu5085at 87.099 kb on - strand, within Atu5085at 87.109 kb on + strand, within Atu5085at 87.173 kb on + strand, within Atu5085at 87.173 kb on + strand, within Atu5085at 87.236 kb on + strand, within Atu5085at 87.307 kb on + strand, within Atu5085at 87.343 kb on + strand, within Atu5085at 87.351 kb on - strand, within Atu5085at 87.382 kb on + strand, within Atu5085at 87.498 kb on - strand, within Atu5085at 87.499 kb on + strand, within Atu5085at 87.499 kb on + strand, within Atu5085at 87.499 kb on + strand, within Atu5085at 87.591 kb on - strand, within Atu5085at 87.651 kb on + strand, within Atu5085at 87.717 kb on + strand, within Atu5085at 87.750 kb on + strand, within Atu5085at 87.762 kb on + strand, within Atu5085at 87.787 kb on + strand, within Atu5085at 87.860 kb on - strandat 87.965 kb on + strandat 87.999 kb on - strandat 88.050 kb on - strand, within Atu8047at 88.077 kb on - strand, within Atu8047at 88.120 kb on + strand, within Atu8047at 88.125 kb on + strand, within Atu8047at 88.230 kb on + strand, within Atu8047at 88.254 kb on - strandat 88.265 kb on - strandat 88.341 kb on - strandat 88.400 kb on + strandat 88.416 kb on - strandat 88.439 kb on - strandat 88.533 kb on + strandat 88.809 kb on - strand, within Atu5086at 88.874 kb on - strand, within Atu5086at 88.885 kb on + strand, within Atu5086at 88.948 kb on - strand, within Atu5086at 89.001 kb on - strand, within Atu5086at 89.050 kb on + strand, within Atu5086at 89.072 kb on + strand, within Atu5086at 89.112 kb on + strand, within Atu5086at 89.114 kb on + strand, within Atu5086at 89.120 kb on - strand, within Atu5086at 89.127 kb on + strand, within Atu5086at 89.170 kb on + strand, within Atu5086at 89.195 kb on - strand, within Atu5086at 89.253 kb on + strand, within Atu5086

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Per-strain Table

Position Strand Gene LocusTag Fraction 1,4-Butanediol (C)
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87,002 - +0.0
87,024 - Atu5085 0.10 -0.1
87,025 - Atu5085 0.10 -0.8
87,061 + Atu5085 0.14 +0.2
87,064 + Atu5085 0.14 -0.3
87,069 - Atu5085 0.15 +0.0
87,071 + Atu5085 0.15 +0.1
87,072 - Atu5085 0.15 +1.1
87,078 + Atu5085 0.16 -1.1
87,078 + Atu5085 0.16 +0.7
87,079 - Atu5085 0.16 +0.3
87,079 - Atu5085 0.16 -0.2
87,080 - Atu5085 0.16 +0.3
87,081 - Atu5085 0.16 +0.2
87,099 - Atu5085 0.18 -0.5
87,099 - Atu5085 0.18 -0.4
87,109 + Atu5085 0.19 -0.0
87,173 + Atu5085 0.26 -0.2
87,173 + Atu5085 0.26 -0.5
87,236 + Atu5085 0.32 +0.4
87,307 + Atu5085 0.40 +0.3
87,343 + Atu5085 0.44 +0.0
87,351 - Atu5085 0.44 +0.0
87,382 + Atu5085 0.48 -0.0
87,498 - Atu5085 0.60 -0.3
87,499 + Atu5085 0.60 -0.5
87,499 + Atu5085 0.60 +0.4
87,499 + Atu5085 0.60 -0.4
87,591 - Atu5085 0.69 +0.2
87,651 + Atu5085 0.76 +0.2
87,717 + Atu5085 0.82 -0.2
87,750 + Atu5085 0.86 +0.5
87,762 + Atu5085 0.87 +0.4
87,787 + Atu5085 0.90 +0.1
87,860 - +0.1
87,965 + +1.4
87,999 - +0.2
88,050 - Atu8047 0.21 +0.5
88,077 - Atu8047 0.31 +0.1
88,120 + Atu8047 0.47 +0.5
88,125 + Atu8047 0.49 +0.0
88,230 + Atu8047 0.88 +0.4
88,254 - +0.1
88,265 - +0.0
88,341 - +0.9
88,400 + +0.0
88,416 - +2.0
88,439 - +0.9
88,533 + +0.2
88,809 - Atu5086 0.17 +0.1
88,874 - Atu5086 0.21 +0.5
88,885 + Atu5086 0.22 -0.1
88,948 - Atu5086 0.26 +1.5
89,001 - Atu5086 0.30 -0.0
89,050 + Atu5086 0.34 +0.3
89,072 + Atu5086 0.35 +0.9
89,112 + Atu5086 0.38 +0.3
89,114 + Atu5086 0.38 -0.7
89,120 - Atu5086 0.38 -0.4
89,127 + Atu5086 0.39 +2.1
89,170 + Atu5086 0.42 +0.5
89,195 - Atu5086 0.44 -0.2
89,253 + Atu5086 0.48 -0.2

Or see this region's nucleotide sequence