Experiment: 1,4-Butanediol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5474 and Atu5475 are separated by 31 nucleotides Atu5475 and Atu5476 are separated by 39 nucleotides
Atu5474: Atu5474 - 2-hydroxyacid dehydrogenase, at 466,208 to 467,143
Atu5474
Atu5475: Atu5475 - hypothetical protein, at 467,175 to 467,588
Atu5475
Atu5476: Atu5476 - CTP synthase, at 467,628 to 468,851
Atu5476
Position (kb) 467
468 Strain fitness (log2 ratio) -1
0
1 at 466.181 kb on - strand at 466.206 kb on + strand at 466.209 kb on - strand at 466.211 kb on - strand at 466.243 kb on + strand at 466.248 kb on + strand at 466.271 kb on + strand at 466.275 kb on - strand at 466.350 kb on + strand, within Atu5474 at 466.358 kb on - strand, within Atu5474 at 466.358 kb on - strand, within Atu5474 at 466.431 kb on + strand, within Atu5474 at 466.478 kb on + strand, within Atu5474 at 466.491 kb on + strand, within Atu5474 at 466.499 kb on - strand, within Atu5474 at 466.518 kb on + strand, within Atu5474 at 466.536 kb on - strand, within Atu5474 at 466.557 kb on + strand, within Atu5474 at 466.616 kb on + strand, within Atu5474 at 466.690 kb on - strand, within Atu5474 at 466.707 kb on + strand, within Atu5474 at 466.719 kb on - strand, within Atu5474 at 466.752 kb on + strand, within Atu5474 at 466.807 kb on - strand, within Atu5474 at 466.832 kb on + strand, within Atu5474 at 466.835 kb on - strand, within Atu5474 at 466.853 kb on + strand, within Atu5474 at 466.909 kb on + strand, within Atu5474 at 466.922 kb on - strand, within Atu5474 at 466.987 kb on + strand, within Atu5474 at 467.094 kb on + strand at 467.173 kb on - strand at 467.202 kb on + strand at 467.301 kb on + strand, within Atu5475 at 467.386 kb on + strand, within Atu5475 at 467.501 kb on + strand, within Atu5475 at 467.519 kb on - strand, within Atu5475 at 467.547 kb on - strand at 467.593 kb on - strand at 467.629 kb on + strand at 467.635 kb on + strand at 467.643 kb on - strand at 467.779 kb on - strand, within Atu5476 at 467.786 kb on - strand, within Atu5476 at 467.801 kb on + strand, within Atu5476 at 467.809 kb on - strand, within Atu5476 at 467.829 kb on + strand, within Atu5476 at 467.832 kb on - strand, within Atu5476 at 467.870 kb on + strand, within Atu5476 at 467.885 kb on + strand, within Atu5476 at 467.885 kb on + strand, within Atu5476 at 467.885 kb on + strand, within Atu5476 at 467.890 kb on + strand, within Atu5476 at 467.893 kb on - strand, within Atu5476 at 467.893 kb on - strand, within Atu5476 at 467.893 kb on - strand, within Atu5476 at 467.916 kb on + strand, within Atu5476 at 467.943 kb on - strand, within Atu5476 at 468.137 kb on - strand, within Atu5476 at 468.231 kb on - strand, within Atu5476 at 468.248 kb on - strand, within Atu5476 at 468.306 kb on + strand, within Atu5476 at 468.371 kb on - strand, within Atu5476 at 468.404 kb on - strand, within Atu5476 at 468.429 kb on + strand, within Atu5476 at 468.437 kb on - strand, within Atu5476 at 468.462 kb on + strand, within Atu5476 at 468.476 kb on + strand, within Atu5476 at 468.553 kb on + strand, within Atu5476 at 468.570 kb on + strand, within Atu5476 at 468.570 kb on + strand, within Atu5476 at 468.586 kb on - strand, within Atu5476
Per-strain Table
Position Strand Gene LocusTag Fraction 1,4-Butanediol (C) remove 466,181 - -1.0 466,206 + +0.2 466,209 - -0.9 466,211 - +0.1 466,243 + +0.2 466,248 + +0.9 466,271 + -0.2 466,275 - -0.7 466,350 + Atu5474 0.15 +0.1 466,358 - Atu5474 0.16 -0.0 466,358 - Atu5474 0.16 -0.2 466,431 + Atu5474 0.24 -0.1 466,478 + Atu5474 0.29 +0.2 466,491 + Atu5474 0.30 +0.1 466,499 - Atu5474 0.31 -0.8 466,518 + Atu5474 0.33 -0.1 466,536 - Atu5474 0.35 +0.9 466,557 + Atu5474 0.37 +0.6 466,616 + Atu5474 0.44 +0.7 466,690 - Atu5474 0.51 -0.1 466,707 + Atu5474 0.53 +1.7 466,719 - Atu5474 0.55 +0.0 466,752 + Atu5474 0.58 +0.8 466,807 - Atu5474 0.64 -0.1 466,832 + Atu5474 0.67 -0.7 466,835 - Atu5474 0.67 +0.4 466,853 + Atu5474 0.69 -0.0 466,909 + Atu5474 0.75 -0.4 466,922 - Atu5474 0.76 +0.3 466,987 + Atu5474 0.83 +0.3 467,094 + +0.1 467,173 - +0.1 467,202 + +0.5 467,301 + Atu5475 0.30 -0.1 467,386 + Atu5475 0.51 +0.6 467,501 + Atu5475 0.79 +0.4 467,519 - Atu5475 0.83 +0.3 467,547 - +0.0 467,593 - -0.9 467,629 + -0.2 467,635 + -0.4 467,643 - +0.2 467,779 - Atu5476 0.12 +0.1 467,786 - Atu5476 0.13 +0.2 467,801 + Atu5476 0.14 +0.0 467,809 - Atu5476 0.15 +0.5 467,829 + Atu5476 0.16 +0.5 467,832 - Atu5476 0.17 +0.2 467,870 + Atu5476 0.20 +0.3 467,885 + Atu5476 0.21 -0.2 467,885 + Atu5476 0.21 +1.1 467,885 + Atu5476 0.21 -0.5 467,890 + Atu5476 0.21 -0.6 467,893 - Atu5476 0.22 -0.1 467,893 - Atu5476 0.22 +0.0 467,893 - Atu5476 0.22 -0.2 467,916 + Atu5476 0.24 -0.7 467,943 - Atu5476 0.26 +1.5 468,137 - Atu5476 0.42 -1.1 468,231 - Atu5476 0.49 +0.6 468,248 - Atu5476 0.51 +0.9 468,306 + Atu5476 0.55 -0.7 468,371 - Atu5476 0.61 -0.5 468,404 - Atu5476 0.63 +0.1 468,429 + Atu5476 0.65 -0.0 468,437 - Atu5476 0.66 +0.1 468,462 + Atu5476 0.68 -0.2 468,476 + Atu5476 0.69 -0.2 468,553 + Atu5476 0.76 -0.2 468,570 + Atu5476 0.77 -0.2 468,570 + Atu5476 0.77 -0.1 468,586 - Atu5476 0.78 -0.1
Or see this region's nucleotide sequence