Experiment: 1,4-Butanediol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3641 and Atu3642 are separated by 13 nucleotides Atu3642 and Atu3643 are separated by 129 nucleotides
Atu3641: Atu3641 - hypothetical protein, at 693,818 to 694,927
Atu3641
Atu3642: Atu3642 - vgrG protein, at 694,941 to 697,205
Atu3642
Atu3643: Atu3643 - hypothetical protein, at 697,335 to 698,270
Atu3643
Position (kb) 694
695
696
697
698 Strain fitness (log2 ratio) -2
-1
0
1
2 at 693.975 kb on + strand, within Atu3641 at 694.063 kb on + strand, within Atu3641 at 694.101 kb on + strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.215 kb on - strand, within Atu3641 at 694.253 kb on - strand, within Atu3641 at 694.256 kb on + strand, within Atu3641 at 694.321 kb on - strand, within Atu3641 at 694.373 kb on + strand, within Atu3641 at 694.443 kb on - strand, within Atu3641 at 694.539 kb on - strand, within Atu3641 at 694.685 kb on + strand, within Atu3641 at 694.693 kb on - strand, within Atu3641 at 694.743 kb on - strand, within Atu3641 at 694.809 kb on + strand, within Atu3641 at 694.809 kb on + strand, within Atu3641 at 694.812 kb on - strand, within Atu3641 at 694.834 kb on - strand at 694.890 kb on - strand at 694.913 kb on + strand at 694.913 kb on + strand at 694.993 kb on + strand at 694.995 kb on + strand at 695.002 kb on + strand at 695.081 kb on - strand at 695.092 kb on + strand at 695.154 kb on + strand at 695.168 kb on + strand, within Atu3642 at 695.196 kb on - strand, within Atu3642 at 695.381 kb on - strand, within Atu3642 at 695.408 kb on - strand, within Atu3642 at 695.410 kb on - strand, within Atu3642 at 695.413 kb on - strand, within Atu3642 at 695.421 kb on + strand, within Atu3642 at 695.429 kb on - strand, within Atu3642 at 695.429 kb on - strand, within Atu3642 at 695.858 kb on + strand, within Atu3642 at 696.195 kb on + strand, within Atu3642 at 696.210 kb on + strand, within Atu3642 at 696.246 kb on - strand, within Atu3642 at 696.363 kb on - strand, within Atu3642 at 696.721 kb on + strand, within Atu3642 at 696.721 kb on + strand, within Atu3642 at 696.721 kb on + strand, within Atu3642 at 696.721 kb on + strand, within Atu3642 at 696.721 kb on + strand, within Atu3642 at 696.721 kb on + strand, within Atu3642 at 696.976 kb on + strand, within Atu3642 at 696.986 kb on + strand at 697.028 kb on + strand at 697.075 kb on - strand at 697.274 kb on - strand at 697.318 kb on - strand at 697.386 kb on - strand at 697.413 kb on + strand at 697.482 kb on + strand, within Atu3643 at 697.490 kb on - strand, within Atu3643 at 697.502 kb on + strand, within Atu3643 at 697.547 kb on + strand, within Atu3643 at 697.619 kb on + strand, within Atu3643 at 697.654 kb on + strand, within Atu3643 at 697.718 kb on - strand, within Atu3643 at 697.745 kb on + strand, within Atu3643 at 697.757 kb on + strand, within Atu3643 at 697.789 kb on - strand, within Atu3643 at 697.806 kb on - strand, within Atu3643 at 697.878 kb on - strand, within Atu3643 at 697.878 kb on - strand, within Atu3643 at 697.922 kb on + strand, within Atu3643 at 697.934 kb on + strand, within Atu3643 at 697.984 kb on + strand, within Atu3643 at 697.999 kb on - strand, within Atu3643 at 698.026 kb on - strand, within Atu3643 at 698.047 kb on - strand, within Atu3643 at 698.066 kb on - strand, within Atu3643 at 698.090 kb on - strand, within Atu3643 at 698.110 kb on + strand, within Atu3643 at 698.112 kb on + strand, within Atu3643 at 698.112 kb on + strand, within Atu3643 at 698.120 kb on - strand, within Atu3643 at 698.130 kb on - strand, within Atu3643 at 698.130 kb on - strand, within Atu3643 at 698.159 kb on - strand, within Atu3643
Per-strain Table
Position Strand Gene LocusTag Fraction 1,4-Butanediol (C) remove 693,975 + Atu3641 0.14 -1.4 694,063 + Atu3641 0.22 +0.0 694,101 + Atu3641 0.25 +0.5 694,109 - Atu3641 0.26 +0.7 694,109 - Atu3641 0.26 -0.1 694,109 - Atu3641 0.26 -0.2 694,215 - Atu3641 0.36 +0.5 694,253 - Atu3641 0.39 +0.3 694,256 + Atu3641 0.39 -0.7 694,321 - Atu3641 0.45 -1.8 694,373 + Atu3641 0.50 +0.5 694,443 - Atu3641 0.56 -0.0 694,539 - Atu3641 0.65 -0.2 694,685 + Atu3641 0.78 +0.1 694,693 - Atu3641 0.79 +0.1 694,743 - Atu3641 0.83 +0.4 694,809 + Atu3641 0.89 +0.1 694,809 + Atu3641 0.89 +0.2 694,812 - Atu3641 0.90 +0.2 694,834 - -0.1 694,890 - +0.6 694,913 + +0.1 694,913 + -0.2 694,993 + -1.4 694,995 + +0.8 695,002 + -0.0 695,081 - -0.1 695,092 + -0.2 695,154 + -0.0 695,168 + Atu3642 0.10 +0.4 695,196 - Atu3642 0.11 +0.1 695,381 - Atu3642 0.19 +0.2 695,408 - Atu3642 0.21 -0.7 695,410 - Atu3642 0.21 +0.2 695,413 - Atu3642 0.21 +1.4 695,421 + Atu3642 0.21 +0.3 695,429 - Atu3642 0.22 +0.3 695,429 - Atu3642 0.22 -0.4 695,858 + Atu3642 0.40 +0.3 696,195 + Atu3642 0.55 -0.2 696,210 + Atu3642 0.56 -0.4 696,246 - Atu3642 0.58 +1.6 696,363 - Atu3642 0.63 +1.4 696,721 + Atu3642 0.79 +0.6 696,721 + Atu3642 0.79 +0.1 696,721 + Atu3642 0.79 +0.2 696,721 + Atu3642 0.79 +0.4 696,721 + Atu3642 0.79 +0.5 696,721 + Atu3642 0.79 +0.4 696,976 + Atu3642 0.90 +0.8 696,986 + +0.2 697,028 + -0.1 697,075 - +0.2 697,274 - +0.2 697,318 - +0.2 697,386 - -0.5 697,413 + -0.1 697,482 + Atu3643 0.16 -0.2 697,490 - Atu3643 0.17 +0.5 697,502 + Atu3643 0.18 -0.0 697,547 + Atu3643 0.23 +0.2 697,619 + Atu3643 0.30 -0.0 697,654 + Atu3643 0.34 +0.5 697,718 - Atu3643 0.41 +0.4 697,745 + Atu3643 0.44 -0.3 697,757 + Atu3643 0.45 +1.1 697,789 - Atu3643 0.49 +0.5 697,806 - Atu3643 0.50 +0.1 697,878 - Atu3643 0.58 +0.9 697,878 - Atu3643 0.58 +0.8 697,922 + Atu3643 0.63 +0.1 697,934 + Atu3643 0.64 -0.5 697,984 + Atu3643 0.69 +1.1 697,999 - Atu3643 0.71 +0.0 698,026 - Atu3643 0.74 -0.9 698,047 - Atu3643 0.76 -0.5 698,066 - Atu3643 0.78 +0.8 698,090 - Atu3643 0.81 +2.4 698,110 + Atu3643 0.83 -0.1 698,112 + Atu3643 0.83 +0.1 698,112 + Atu3643 0.83 +0.1 698,120 - Atu3643 0.84 -0.9 698,130 - Atu3643 0.85 +0.8 698,130 - Atu3643 0.85 -0.1 698,159 - Atu3643 0.88 +0.2
Or see this region's nucleotide sequence