Experiment: 1,4-Butanediol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3546 and Atu3547 are separated by 69 nucleotides Atu3547 and Atu3548 are separated by 144 nucleotides Atu3548 and Atu3549 overlap by 4 nucleotides
Atu3546: Atu3546 - hypothetical protein, at 594,873 to 596,891
Atu3546
Atu3547: Atu3547 - hypothetical protein, at 596,961 to 597,617
Atu3547
Atu3548: Atu3548 - glycosyltransferase, at 597,762 to 598,988
Atu3548
Atu3549: Atu3549 - hypothetical protein, at 598,985 to 600,322
Atu3549
Position (kb) 597
598
599 Strain fitness (log2 ratio) -1
0
1 at 596.944 kb on - strand at 596.993 kb on - strand at 597.000 kb on - strand at 597.023 kb on + strand at 597.048 kb on + strand, within Atu3547 at 597.107 kb on - strand, within Atu3547 at 597.152 kb on - strand, within Atu3547 at 597.158 kb on + strand, within Atu3547 at 597.169 kb on + strand, within Atu3547 at 597.169 kb on + strand, within Atu3547 at 597.169 kb on + strand, within Atu3547 at 597.169 kb on + strand, within Atu3547 at 597.177 kb on - strand, within Atu3547 at 597.219 kb on + strand, within Atu3547 at 597.353 kb on + strand, within Atu3547 at 597.381 kb on + strand, within Atu3547 at 597.382 kb on + strand, within Atu3547 at 597.389 kb on - strand, within Atu3547 at 597.475 kb on - strand, within Atu3547 at 597.487 kb on - strand, within Atu3547 at 597.540 kb on + strand, within Atu3547 at 597.547 kb on + strand, within Atu3547 at 597.611 kb on + strand at 597.909 kb on - strand, within Atu3548 at 597.974 kb on - strand, within Atu3548 at 598.077 kb on + strand, within Atu3548 at 598.085 kb on - strand, within Atu3548 at 598.166 kb on - strand, within Atu3548 at 598.345 kb on + strand, within Atu3548 at 598.413 kb on + strand, within Atu3548 at 598.420 kb on + strand, within Atu3548 at 598.487 kb on - strand, within Atu3548 at 598.494 kb on - strand, within Atu3548 at 598.548 kb on + strand, within Atu3548 at 598.616 kb on - strand, within Atu3548 at 598.675 kb on + strand, within Atu3548 at 598.695 kb on + strand, within Atu3548 at 598.752 kb on - strand, within Atu3548 at 598.774 kb on - strand, within Atu3548 at 598.824 kb on - strand, within Atu3548 at 598.883 kb on + strand at 598.895 kb on + strand at 598.904 kb on - strand at 598.904 kb on - strand at 599.122 kb on - strand, within Atu3549 at 599.175 kb on - strand, within Atu3549 at 599.323 kb on - strand, within Atu3549 at 599.323 kb on - strand, within Atu3549 at 599.328 kb on - strand, within Atu3549 at 599.333 kb on - strand, within Atu3549 at 599.357 kb on - strand, within Atu3549 at 599.358 kb on - strand, within Atu3549 at 599.358 kb on - strand, within Atu3549 at 599.368 kb on - strand, within Atu3549 at 599.375 kb on - strand, within Atu3549 at 599.386 kb on - strand, within Atu3549 at 599.535 kb on + strand, within Atu3549 at 599.535 kb on + strand, within Atu3549 at 599.535 kb on + strand, within Atu3549 at 599.535 kb on + strand, within Atu3549 at 599.543 kb on - strand, within Atu3549 at 599.543 kb on - strand, within Atu3549 at 599.557 kb on + strand, within Atu3549 at 599.557 kb on + strand, within Atu3549 at 599.565 kb on - strand, within Atu3549 at 599.584 kb on - strand, within Atu3549 at 599.609 kb on - strand, within Atu3549 at 599.609 kb on - strand, within Atu3549 at 599.609 kb on - strand, within Atu3549 at 599.609 kb on - strand, within Atu3549 at 599.734 kb on + strand, within Atu3549 at 599.751 kb on + strand, within Atu3549 at 599.751 kb on + strand, within Atu3549 at 599.759 kb on - strand, within Atu3549 at 599.759 kb on - strand, within Atu3549 at 599.759 kb on - strand, within Atu3549 at 599.781 kb on - strand, within Atu3549 at 599.888 kb on + strand, within Atu3549 at 599.931 kb on + strand, within Atu3549
Per-strain Table
Position Strand Gene LocusTag Fraction 1,4-Butanediol (C) remove 596,944 - +0.2 596,993 - -0.1 597,000 - -0.2 597,023 + -0.3 597,048 + Atu3547 0.13 +1.3 597,107 - Atu3547 0.22 +0.1 597,152 - Atu3547 0.29 +0.5 597,158 + Atu3547 0.30 +0.6 597,169 + Atu3547 0.32 -0.4 597,169 + Atu3547 0.32 +0.0 597,169 + Atu3547 0.32 +0.0 597,169 + Atu3547 0.32 +0.2 597,177 - Atu3547 0.33 +0.0 597,219 + Atu3547 0.39 -1.0 597,353 + Atu3547 0.60 +0.3 597,381 + Atu3547 0.64 +1.1 597,382 + Atu3547 0.64 +1.0 597,389 - Atu3547 0.65 -0.3 597,475 - Atu3547 0.78 +0.2 597,487 - Atu3547 0.80 -0.1 597,540 + Atu3547 0.88 +0.2 597,547 + Atu3547 0.89 +0.3 597,611 + -0.5 597,909 - Atu3548 0.12 +0.2 597,974 - Atu3548 0.17 +0.6 598,077 + Atu3548 0.26 +0.2 598,085 - Atu3548 0.26 -0.1 598,166 - Atu3548 0.33 +0.4 598,345 + Atu3548 0.48 +1.3 598,413 + Atu3548 0.53 +0.3 598,420 + Atu3548 0.54 -1.2 598,487 - Atu3548 0.59 +0.2 598,494 - Atu3548 0.60 +1.3 598,548 + Atu3548 0.64 +0.9 598,616 - Atu3548 0.70 -0.7 598,675 + Atu3548 0.74 -0.7 598,695 + Atu3548 0.76 +0.3 598,752 - Atu3548 0.81 +0.3 598,774 - Atu3548 0.82 -0.1 598,824 - Atu3548 0.87 +0.3 598,883 + +0.1 598,895 + +0.3 598,904 - +0.6 598,904 - +0.1 599,122 - Atu3549 0.10 -0.7 599,175 - Atu3549 0.14 +0.6 599,323 - Atu3549 0.25 -0.0 599,323 - Atu3549 0.25 -0.7 599,328 - Atu3549 0.26 -0.3 599,333 - Atu3549 0.26 +0.4 599,357 - Atu3549 0.28 +0.3 599,358 - Atu3549 0.28 -0.1 599,358 - Atu3549 0.28 +0.7 599,368 - Atu3549 0.29 -0.3 599,375 - Atu3549 0.29 +0.4 599,386 - Atu3549 0.30 -0.3 599,535 + Atu3549 0.41 +0.0 599,535 + Atu3549 0.41 -0.3 599,535 + Atu3549 0.41 -1.0 599,535 + Atu3549 0.41 +0.5 599,543 - Atu3549 0.42 -0.2 599,543 - Atu3549 0.42 -0.5 599,557 + Atu3549 0.43 -0.3 599,557 + Atu3549 0.43 +0.1 599,565 - Atu3549 0.43 +0.8 599,584 - Atu3549 0.45 +0.0 599,609 - Atu3549 0.47 +0.7 599,609 - Atu3549 0.47 -0.4 599,609 - Atu3549 0.47 -0.1 599,609 - Atu3549 0.47 +0.0 599,734 + Atu3549 0.56 +0.1 599,751 + Atu3549 0.57 -0.1 599,751 + Atu3549 0.57 +0.1 599,759 - Atu3549 0.58 +0.3 599,759 - Atu3549 0.58 +1.3 599,759 - Atu3549 0.58 +0.3 599,781 - Atu3549 0.59 +1.0 599,888 + Atu3549 0.67 +0.2 599,931 + Atu3549 0.71 +0.8
Or see this region's nucleotide sequence