Strain Fitness in Escherichia coli BW25113 around b4592

Experiment: LB Anaerobic with Spiramycin 0.00003125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntappB and yccB are separated by 12 nucleotidesyccB and appA are separated by 79 nucleotides b0979: appB - cytochrome bd-II oxidase, subunit II (NCBI), at 1,038,519 to 1,039,655 appB b4592: yccB - hypothetical protein (RefSeq), at 1,039,668 to 1,039,760 yccB b0980: appA - phosphoanhydride phosphorylase (NCBI), at 1,039,840 to 1,041,138 appA Position (kb) 1039 1040Strain fitness (log2 ratio) -2 -1 0 1 2at 1038.805 kb on - strand, within appBat 1039.201 kb on + strand, within appBat 1039.201 kb on + strand, within appBat 1039.201 kb on + strand, within appBat 1039.209 kb on - strand, within appBat 1039.209 kb on - strand, within appBat 1039.263 kb on + strand, within appBat 1039.453 kb on - strand, within appBat 1039.453 kb on - strand, within appBat 1039.528 kb on + strand, within appBat 1039.566 kb on + strandat 1039.581 kb on + strandat 1039.617 kb on + strandat 1039.728 kb on - strand, within yccBat 1039.730 kb on + strand, within yccBat 1039.730 kb on + strand, within yccBat 1039.764 kb on + strandat 1039.829 kb on + strandat 1039.878 kb on - strandat 1039.903 kb on + strandat 1039.903 kb on + strandat 1039.916 kb on - strandat 1039.950 kb on + strandat 1039.950 kb on + strandat 1039.950 kb on + strandat 1039.960 kb on - strandat 1040.065 kb on - strand, within appAat 1040.184 kb on - strand, within appAat 1040.226 kb on - strand, within appAat 1040.254 kb on + strand, within appAat 1040.348 kb on - strand, within appA

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Spiramycin 0.00003125 mM
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1,038,805 - appB b0979 0.25 +0.1
1,039,201 + appB b0979 0.60 -0.2
1,039,201 + appB b0979 0.60 -0.4
1,039,201 + appB b0979 0.60 +0.4
1,039,209 - appB b0979 0.61 -0.0
1,039,209 - appB b0979 0.61 +1.1
1,039,263 + appB b0979 0.65 +0.3
1,039,453 - appB b0979 0.82 -1.0
1,039,453 - appB b0979 0.82 +0.1
1,039,528 + appB b0979 0.89 +1.9
1,039,566 + -0.0
1,039,581 + -0.3
1,039,617 + -0.9
1,039,728 - yccB b4592 0.65 -1.7
1,039,730 + yccB b4592 0.67 -1.9
1,039,730 + yccB b4592 0.67 -0.4
1,039,764 + -0.1
1,039,829 + -0.1
1,039,878 - +0.2
1,039,903 + +0.7
1,039,903 + -0.2
1,039,916 - -0.8
1,039,950 + +0.3
1,039,950 + +0.3
1,039,950 + +0.6
1,039,960 - -0.3
1,040,065 - appA b0980 0.17 +0.3
1,040,184 - appA b0980 0.26 -0.1
1,040,226 - appA b0980 0.30 +0.3
1,040,254 + appA b0980 0.32 +0.5
1,040,348 - appA b0980 0.39 -0.1

Or see this region's nucleotide sequence