Strain Fitness in Escherichia coli BW25113 around b1324

Experiment: LB Anaerobic with Spiramycin 0.000125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttyrR and tpx are separated by 43 nucleotidestpx and ycjG are separated by 118 nucleotides b1323: tyrR - DNA-binding transcriptional dual regulator, tyrosine-binding (NCBI), at 1,384,744 to 1,386,285 tyrR b1324: tpx - thiol peroxidase (NCBI), at 1,386,329 to 1,386,835 tpx b1325: ycjG - putative muconate cycloisomerase I (EC 5.5.-.-) (VIMSS), at 1,386,954 to 1,387,919 ycjG Position (kb) 1386 1387Strain fitness (log2 ratio) -1 0 1at 1385.791 kb on + strand, within tyrRat 1385.987 kb on - strand, within tyrRat 1386.014 kb on + strand, within tyrRat 1386.352 kb on - strandat 1386.352 kb on - strandat 1386.442 kb on + strand, within tpxat 1386.528 kb on + strand, within tpxat 1386.585 kb on + strandat 1386.585 kb on + strand, within tpxat 1386.603 kb on - strand, within tpxat 1386.603 kb on - strand, within tpxat 1386.742 kb on - strand, within tpxat 1386.748 kb on + strand, within tpxat 1386.923 kb on + strandat 1387.059 kb on + strand, within ycjGat 1387.076 kb on - strand, within ycjGat 1387.315 kb on - strandat 1387.352 kb on + strand, within ycjGat 1387.360 kb on - strand, within ycjGat 1387.417 kb on - strand, within ycjGat 1387.417 kb on - strand, within ycjGat 1387.485 kb on + strand, within ycjG

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Spiramycin 0.000125 mM
remove
1,385,791 + tyrR b1323 0.68 -0.4
1,385,987 - tyrR b1323 0.81 -0.6
1,386,014 + tyrR b1323 0.82 +0.1
1,386,352 - +0.6
1,386,352 - +0.1
1,386,442 + tpx b1324 0.22 -0.9
1,386,528 + tpx b1324 0.39 -1.1
1,386,585 + +0.8
1,386,585 + tpx b1324 0.50 -0.9
1,386,603 - tpx b1324 0.54 -0.5
1,386,603 - tpx b1324 0.54 -0.9
1,386,742 - tpx b1324 0.81 -0.8
1,386,748 + tpx b1324 0.83 -0.6
1,386,923 + -0.7
1,387,059 + ycjG b1325 0.11 -0.9
1,387,076 - ycjG b1325 0.13 +0.6
1,387,315 - +1.4
1,387,352 + ycjG b1325 0.41 -0.4
1,387,360 - ycjG b1325 0.42 -0.1
1,387,417 - ycjG b1325 0.48 +1.2
1,387,417 - ycjG b1325 0.48 -0.1
1,387,485 + ycjG b1325 0.55 +0.8

Or see this region's nucleotide sequence