Strain Fitness in Pseudomonas putida KT2440 around PP_3786

Experiment: 1-Pentanol (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol (C)
4,312,820	+		PP_3785	0.28	+0.3
4,312,820	+		PP_3785	0.28	-0.5
4,312,821	-		PP_3785	0.29	+0.2
4,312,891	+		PP_3785	0.34	+0.2
4,312,892	-		PP_3785	0.34	+0.5
4,312,897	+		PP_3785	0.34	-0.6
4,312,897	+		PP_3785	0.34	-0.2
4,312,898	-		PP_3785	0.34	+0.4
4,312,898	-		PP_3785	0.34	+0.4
4,312,969	+		PP_3785	0.40	+0.3
4,312,980	+				-0.5
4,313,065	+		PP_3785	0.47	+0.0
4,313,191	+		PP_3785	0.56	-1.6
4,313,192	-		PP_3785	0.56	-0.9
4,313,192	-		PP_3785	0.56	+0.2
4,313,195	+		PP_3785	0.56	+0.3
4,313,195	+		PP_3785	0.56	+0.0
4,313,195	+		PP_3785	0.56	-0.0
4,313,196	-		PP_3785	0.57	-1.0
4,313,257	-		PP_3785	0.61	-0.1
4,313,291	-		PP_3785	0.64	-1.9
4,313,291	-		PP_3785	0.64	+0.2
4,313,310	-		PP_3785	0.65	-0.1
4,313,333	+		PP_3785	0.67	-0.9
4,313,402	-		PP_3785	0.72	+0.6
4,313,402	-		PP_3785	0.72	-0.5
4,313,402	-		PP_3785	0.72	-0.8
4,313,437	-		PP_3785	0.74	-0.6
4,313,449	+		PP_3785	0.75	-0.0
4,313,450	-		PP_3785	0.75	+0.4
4,313,464	+		PP_3785	0.77	-0.5
4,313,464	+		PP_3785	0.77	+0.7
4,313,465	-		PP_3785	0.77	-0.1
4,313,465	-		PP_3785	0.77	-0.9
4,313,465	-		PP_3785	0.77	-0.2
4,313,668	+				-0.4
4,313,668	+				-0.1
4,313,669	-				+0.1
4,313,669	-				+0.1
4,313,669	-				-0.2
4,313,675	-				-0.9
4,313,773	+				+0.6
4,313,774	-				-0.4
4,314,006	+		PP_3786	0.17	-0.5
4,314,006	+		PP_3786	0.17	+0.2
4,314,006	+		PP_3786	0.17	-0.3
4,314,006	+		PP_3786	0.17	+0.7
4,314,006	+		PP_3786	0.17	-0.4
4,314,006	+		PP_3786	0.17	+1.1
4,314,006	+		PP_3786	0.17	-0.9
4,314,007	-		PP_3786	0.17	+0.8
4,314,007	-		PP_3786	0.17	+0.1
4,314,007	-		PP_3786	0.17	-0.7
4,314,007	-		PP_3786	0.17	+0.3
4,314,012	+		PP_3786	0.18	+1.0
4,314,013	-		PP_3786	0.18	+0.7
4,314,013	-		PP_3786	0.18	-0.3
4,314,013	-		PP_3786	0.18	-0.3
4,314,013	-		PP_3786	0.18	-0.1
4,314,092	-		PP_3786	0.24	-0.0
4,314,127	+		PP_3786	0.27	-0.8
4,314,127	+		PP_3786	0.27	+0.5
4,314,127	+		PP_3786	0.27	-0.3
4,314,142	+		PP_3786	0.28	+0.5
4,314,142	+		PP_3786	0.28	-0.1
4,314,143	-		PP_3786	0.28	+1.1
4,314,143	-		PP_3786	0.28	+0.7
4,314,143	-		PP_3786	0.28	+0.0
4,314,143	-		PP_3786	0.28	-0.4
4,314,146	+		PP_3786	0.29	+0.4
4,314,146	+		PP_3786	0.29	-0.1
4,314,147	-		PP_3786	0.29	-0.4
4,314,147	-		PP_3786	0.29	-0.3
4,314,147	-		PP_3786	0.29	+0.6
4,314,147	-		PP_3786	0.29	+0.8
4,314,195	-		PP_3786	0.33	-0.7
4,314,195	-		PP_3786	0.33	+0.9
4,314,226	+		PP_3786	0.35	-0.4
4,314,226	+		PP_3786	0.35	+0.4
4,314,227	-		PP_3786	0.35	+0.0
4,314,227	-		PP_3786	0.35	-0.1
4,314,227	-		PP_3786	0.35	-0.1
4,314,227	-		PP_3786	0.35	+0.2
4,314,278	-		PP_3786	0.40	+0.1
4,314,321	+		PP_3786	0.43	+0.6
4,314,423	+		PP_3786	0.52	+0.1
4,314,469	-		PP_3786	0.55	-0.0
4,314,551	+		PP_3786	0.62	+0.5
4,314,552	-		PP_3786	0.62	+0.5
4,314,628	+		PP_3786	0.69	+0.7
4,314,691	+		PP_3786	0.74	-0.4
4,314,691	+		PP_3786	0.74	+0.1
4,314,691	+		PP_3786	0.74	-0.5
4,314,691	+		PP_3786	0.74	-0.3
4,314,691	+		PP_3786	0.74	-0.4
4,314,691	+		PP_3786	0.74	-0.3
4,314,692	-		PP_3786	0.74	-1.2
4,314,692	-		PP_3786	0.74	+0.5
4,314,710	-		PP_3786	0.75	-0.8
4,314,749	-		PP_3786	0.79	+1.9
4,314,775	-		PP_3786	0.81	+0.5
4,314,901	+				-0.3
4,314,902	-				-0.9
4,314,974	-				+0.4
4,314,974	-				+0.8
4,314,974	-				+0.5
4,314,974	-				+0.2
4,315,059	-				-0.4
4,315,097	+		PP_3787	0.10	-0.4
4,315,222	+		PP_3787	0.24	-0.4
4,315,222	+		PP_3787	0.24	+1.5
4,315,222	+		PP_3787	0.24	-0.1
4,315,222	+		PP_3787	0.24	+0.7
4,315,222	+		PP_3787	0.24	+0.5
4,315,222	+		PP_3787	0.24	+0.9
4,315,222	+		PP_3787	0.24	+1.1
4,315,223	-		PP_3787	0.24	-0.2
4,315,223	-		PP_3787	0.24	+0.2
4,315,223	-		PP_3787	0.24	-0.1
4,315,223	-		PP_3787	0.24	+0.1
4,315,223	-		PP_3787	0.24	-0.1
4,315,223	-		PP_3787	0.24	+0.1
4,315,223	-		PP_3787	0.24	-0.3
4,315,223	-		PP_3787	0.24	+0.7
4,315,223	-		PP_3787	0.24	+0.3
4,315,223	-		PP_3787	0.24	-1.3
4,315,303	+		PP_3787	0.33	-1.3
4,315,303	+		PP_3787	0.33	-1.4
4,315,303	+		PP_3787	0.33	-0.0
4,315,303	+		PP_3787	0.33	+1.1
4,315,303	+		PP_3787	0.33	+0.5
4,315,304	-		PP_3787	0.33	-1.2
4,315,304	-		PP_3787	0.33	+0.4
4,315,304	-		PP_3787	0.33	-1.0
4,315,304	-		PP_3787	0.33	-0.2
4,315,304	-		PP_3787	0.33	+1.0
4,315,395	+		PP_3787	0.43	-1.4
4,315,395	+		PP_3787	0.43	-0.3
4,315,396	-		PP_3787	0.43	+0.7
4,315,396	-		PP_3787	0.43	-1.2
4,315,794	-		PP_3787	0.86	+0.4
4,315,794	-		PP_3787	0.86	+0.7
4,315,794	-		PP_3787	0.86	-0.1
4,315,830	+				+0.6
4,315,831	-				-0.4
4,315,847	+				+0.2
4,315,847	+				+0.3
4,315,848	-				-0.6
4,315,893	+				+0.3
4,315,893	+				-0.8
4,315,931	+				-0.6
4,315,932	-				+0.5
4,315,984	+				+0.3
4,315,984	+				-1.4
4,315,985	-				+0.2
4,315,985	-				-0.9
4,315,995	+				-0.4
4,315,995	+				-0.0
4,315,995	+				+1.1
4,315,996	-				+0.2