Strain Fitness in Pseudomonas putida KT2440 around PP_1802

Experiment: 1-Pentanol (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol (C)
2,024,087	+		PP_1801	0.20	+0.5
2,024,147	+		PP_1801	0.25	+0.8
2,024,147	+		PP_1801	0.25	+0.3
2,024,147	+		PP_1801	0.25	+0.7
2,024,148	-		PP_1801	0.25	+0.5
2,024,148	-		PP_1801	0.25	+0.2
2,024,166	-		PP_1801	0.27	+0.4
2,024,259	-		PP_1801	0.35	+0.4
2,024,345	+		PP_1801	0.42	-0.2
2,024,460	+		PP_1801	0.52	+0.7
2,024,468	+		PP_1801	0.53	+0.7
2,024,468	+		PP_1801	0.53	+0.2
2,024,469	-		PP_1801	0.53	+0.8
2,024,469	-		PP_1801	0.53	+0.5
2,024,521	+		PP_1801	0.58	+0.6
2,024,521	+		PP_1801	0.58	-0.2
2,024,521	+		PP_1801	0.58	+0.8
2,024,522	-		PP_1801	0.58	+0.2
2,024,582	+		PP_1801	0.63	+0.3
2,024,727	-		PP_1801	0.76	+0.0
2,024,727	-		PP_1801	0.76	+1.4
2,024,781	+		PP_1801	0.80	-0.4
2,024,781	+		PP_1801	0.80	+0.0
2,024,782	-		PP_1801	0.80	+0.4
2,024,782	-		PP_1801	0.80	+0.4
2,024,782	-		PP_1801	0.80	-0.1
2,024,782	-		PP_1801	0.80	-0.3
2,024,782	-		PP_1801	0.80	+0.5
2,024,811	+		PP_1801	0.83	-0.3
2,024,850	+		PP_1801	0.86	+0.6
2,024,850	+		PP_1801	0.86	-0.1
2,024,850	+		PP_1801	0.86	+1.1
2,024,850	+		PP_1801	0.86	+0.7
2,024,851	-		PP_1801	0.87	+1.3
2,024,851	-		PP_1801	0.87	+0.3
2,024,851	-		PP_1801	0.87	+0.1
2,024,851	-		PP_1801	0.87	+0.7
2,024,981	+				+0.6
2,024,981	+				+0.6
2,024,981	+				+0.4
2,024,981	+				+0.1
2,024,981	+				+0.2
2,025,031	+				+0.2
2,025,031	+				+0.0
2,025,119	+		PP_1802	0.11	-0.4
2,025,119	+		PP_1802	0.11	+1.0
2,025,119	+		PP_1802	0.11	-0.4
2,025,119	+		PP_1802	0.11	+1.0
2,025,120	-		PP_1802	0.11	+0.3
2,025,120	-		PP_1802	0.11	+0.5
2,025,120	-		PP_1802	0.11	+0.1
2,025,120	-		PP_1802	0.11	+0.3
2,025,120	-		PP_1802	0.11	+0.3
2,025,120	-		PP_1802	0.11	-0.3
2,025,120	-		PP_1802	0.11	+1.2
2,025,120	-		PP_1802	0.11	+0.7
2,025,121	+		PP_1802	0.11	+0.7
2,025,122	-		PP_1802	0.11	+0.6
2,025,122	-		PP_1802	0.11	+0.4
2,025,122	-		PP_1802	0.11	+0.4
2,025,122	-		PP_1802	0.11	+0.3
2,025,122	-		PP_1802	0.11	+0.5
2,025,275	-		PP_1802	0.25	+0.8
2,025,292	+		PP_1802	0.26	+0.7
2,025,292	+		PP_1802	0.26	+0.8
2,025,292	+		PP_1802	0.26	+0.2
2,025,292	+		PP_1802	0.26	+0.4
2,025,292	+		PP_1802	0.26	+0.4
2,025,292	+		PP_1802	0.26	+0.5
2,025,292	+		PP_1802	0.26	+0.6
2,025,292	+				+0.6
2,025,293	-		PP_1802	0.26	+0.9
2,025,293	-		PP_1802	0.26	+0.6
2,025,293	-		PP_1802	0.26	+0.4
2,025,293	-		PP_1802	0.26	+0.3
2,025,293	-		PP_1802	0.26	+0.0
2,025,346	+		PP_1802	0.31	+0.2
2,025,347	-		PP_1802	0.31	+0.7
2,025,347	-		PP_1802	0.31	+0.3
2,025,347	-		PP_1802	0.31	+0.7
2,025,347	-		PP_1802	0.31	+0.2
2,025,347	-		PP_1802	0.31	+0.5
2,025,347	-		PP_1802	0.31	+0.6
2,025,388	+		PP_1802	0.35	-1.1
2,025,389	-		PP_1802	0.35	+0.4
2,025,389	-		PP_1802	0.35	+0.4
2,025,389	-		PP_1802	0.35	+0.8
2,025,389	-		PP_1802	0.35	+0.2
2,025,429	+		PP_1802	0.39	+0.9
2,025,430	-		PP_1802	0.39	+0.5
2,025,430	-		PP_1802	0.39	+0.3
2,025,451	+		PP_1802	0.41	+0.6
2,025,451	+		PP_1802	0.41	-0.3
2,025,452	-		PP_1802	0.41	+0.3
2,025,452	-		PP_1802	0.41	+1.1
2,025,452	-		PP_1802	0.41	+0.1
2,025,452	-		PP_1802	0.41	+0.1
2,025,452	-		PP_1802	0.41	+1.0
2,025,452	-		PP_1802	0.41	+0.5
2,025,452	-		PP_1802	0.41	-0.4
2,025,529	+		PP_1802	0.48	+0.2
2,025,529	+		PP_1802	0.48	+0.4
2,025,529	+		PP_1802	0.48	+0.2
2,025,530	-		PP_1802	0.48	+0.3
2,025,530	-		PP_1802	0.48	+1.0
2,025,545	+		PP_1802	0.49	+1.1
2,025,545	+		PP_1802	0.49	+0.4
2,025,599	+		PP_1802	0.54	+0.5
2,025,613	+		PP_1802	0.55	-0.1
2,025,616	+		PP_1802	0.55	+0.7
2,025,616	+		PP_1802	0.55	+0.2
2,025,616	+		PP_1802	0.55	+1.0
2,025,617	-		PP_1802	0.55	+0.2
2,025,617	-		PP_1802	0.55	+0.4
2,025,617	-		PP_1802	0.55	+0.5
2,025,617	-		PP_1802	0.55	+0.9
2,025,632	-		PP_1802	0.57	-0.1
2,025,639	-		PP_1802	0.57	-0.1
2,025,639	-		PP_1802	0.57	+0.4
2,025,651	+		PP_1802	0.59	+0.5
2,025,796	+		PP_1802	0.72	+0.5
2,025,796	+		PP_1802	0.72	+0.6
2,025,797	-		PP_1802	0.72	+0.5
2,025,806	+		PP_1802	0.73	+0.5
2,025,807	-		PP_1802	0.73	-0.0
2,025,807	-		PP_1802	0.73	-0.1
2,025,807	-		PP_1802	0.73	+0.5
2,025,865	+		PP_1802	0.78	+0.5
2,025,865	+		PP_1802	0.78	+0.5
2,025,865	+		PP_1802	0.78	+0.4
2,025,910	+		PP_1802	0.82	+0.7
2,026,042	+				+1.0
2,026,042	+				+0.9
2,026,043	-				-0.1
2,026,052	+				+0.1
2,026,052	+				-0.3
2,026,052	+				+0.1
2,026,052	+				+1.5
2,026,081	+				+0.4
2,026,094	-				+0.1
2,026,094	-				+0.3
2,026,098	+				+1.0
2,026,099	-				+1.6
2,026,099	-				+0.6
2,026,108	+				+0.0
2,026,109	-				+0.6
2,026,179	+				-0.6
2,026,179	+				-0.6
2,026,179	+				-0.1
2,026,179	+				+0.2
2,026,179	+				+0.4
2,026,180	-				+0.2
2,026,180	-				+0.3
2,026,180	-				-0.4
2,026,259	+				+0.5
2,026,259	+				-0.4
2,026,260	-				-0.3
2,026,260	-				+0.2
2,026,260	-				+0.5
2,026,260	-				+1.0
2,026,260	-				+1.3
2,026,260	-				-0.0
2,026,260	-				+0.5
2,026,266	+				+0.0
2,026,267	-				+0.1
2,026,323	+				+0.0
2,026,323	+				+0.2
2,026,377	+		PP_1803	0.14	+0.5
2,026,448	+		PP_1803	0.21	+1.1
2,026,449	-		PP_1803	0.21	+0.6
2,026,449	-		PP_1803	0.21	+0.6
2,026,472	+				+0.0
2,026,472	+		PP_1803	0.24	+0.1
2,026,472	+		PP_1803	0.24	+1.0
2,026,473	-		PP_1803	0.24	+0.1
2,026,473	-		PP_1803	0.24	+0.6
2,026,473	-		PP_1803	0.24	+0.8
2,026,473	-		PP_1803	0.24	-0.1
2,026,478	+		PP_1803	0.24	+0.8
2,026,478	+		PP_1803	0.24	+0.1
2,026,478	+		PP_1803	0.24	-0.8
2,026,478	+		PP_1803	0.24	+0.2
2,026,478	+		PP_1803	0.24	+0.4
2,026,478	+		PP_1803	0.24	+0.5
2,026,478	+		PP_1803	0.24	+0.0
2,026,478	+				+1.5
2,026,478	+		PP_1803	0.24	+0.1
2,026,478	+		PP_1803	0.24	-0.3
2,026,479	-		PP_1803	0.24	-0.0
2,026,479	-		PP_1803	0.24	+0.3
2,026,479	-		PP_1803	0.24	+0.6
2,026,479	-		PP_1803	0.24	+0.9
2,026,479	-		PP_1803	0.24	+0.4
2,026,479	-		PP_1803	0.24	-0.4
2,026,479	-		PP_1803	0.24	+0.2
2,026,654	-		PP_1803	0.42	+1.5
2,026,676	-		PP_1803	0.45	+0.3
2,026,751	+		PP_1803	0.52	+0.5
2,026,752	-		PP_1803	0.52	-0.2
2,026,769	-		PP_1803	0.54	+0.3
2,026,800	+		PP_1803	0.57	+0.5
2,026,800	+		PP_1803	0.57	+0.3
2,026,800	+		PP_1803	0.57	+0.8
2,026,800	+		PP_1803	0.57	+0.4
2,026,801	-		PP_1803	0.57	+0.8
2,026,801	-		PP_1803	0.57	+0.5
2,026,801	-		PP_1803	0.57	+0.7
2,026,826	+		PP_1803	0.60	+0.7
2,026,826	+		PP_1803	0.60	+0.3
2,026,826	+		PP_1803	0.60	-0.1
2,026,827	-		PP_1803	0.60	+0.2
2,026,827	-		PP_1803	0.60	+0.1
2,026,899	+		PP_1803	0.67	+1.0
2,026,899	+		PP_1803	0.67	+0.7
2,026,979	+		PP_1803	0.76	+1.1
2,026,979	+		PP_1803	0.76	+0.5
2,026,980	-		PP_1803	0.76	+1.1
2,026,980	-		PP_1803	0.76	+0.7
2,026,980	-		PP_1803	0.76	+0.7
2,027,060	+		PP_1803	0.84	+0.4
2,027,061	-		PP_1803	0.84	+0.2
2,027,108	+		PP_1803	0.89	+0.1
2,027,109	-		PP_1803	0.89	+0.5
2,027,109	-		PP_1803	0.89	+0.1