Experiment: Propan-1-ol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3586 and Atu3587 are separated by 118 nucleotides Atu3587 and Atu3588 are separated by 9 nucleotides Atu3588 and Atu3589 are separated by 48 nucleotides
Atu3586: Atu3586 - propionyl-CoA carboxylase, at 641,322 to 642,854
Atu3586
Atu3587: Atu3587 - transcriptional regulator, at 642,973 to 644,391
Atu3587
Atu3588: Atu3588 - DNA-3-methyladenine glycosidase II, at 644,401 to 645,048
Atu3588
Atu3589: Atu3589 - glutamyl-Q tRNA(Asp) synthetase, at 645,097 to 645,996
Atu3589
Position (kb) 642
643
644
645 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 641.975 kb on - strand, within Atu3586 at 642.214 kb on - strand, within Atu3586 at 642.215 kb on - strand, within Atu3586 at 642.215 kb on - strand, within Atu3586 at 642.274 kb on - strand, within Atu3586 at 642.285 kb on + strand, within Atu3586 at 642.331 kb on + strand, within Atu3586 at 642.339 kb on - strand, within Atu3586 at 642.412 kb on - strand, within Atu3586 at 642.507 kb on - strand, within Atu3586 at 642.507 kb on - strand, within Atu3586 at 642.519 kb on - strand, within Atu3586 at 642.635 kb on - strand, within Atu3586 at 642.640 kb on - strand, within Atu3586 at 642.651 kb on - strand, within Atu3586 at 642.707 kb on + strand at 642.742 kb on - strand at 642.763 kb on + strand at 642.788 kb on - strand at 642.930 kb on - strand at 643.015 kb on - strand at 643.059 kb on + strand at 643.087 kb on - strand at 643.152 kb on + strand, within Atu3587 at 643.167 kb on + strand, within Atu3587 at 643.315 kb on + strand, within Atu3587 at 643.348 kb on + strand, within Atu3587 at 643.371 kb on - strand, within Atu3587 at 643.459 kb on + strand, within Atu3587 at 643.552 kb on + strand, within Atu3587 at 643.627 kb on - strand, within Atu3587 at 643.696 kb on + strand, within Atu3587 at 643.702 kb on - strand, within Atu3587 at 643.708 kb on + strand, within Atu3587 at 643.786 kb on + strand, within Atu3587 at 643.792 kb on + strand, within Atu3587 at 643.795 kb on - strand, within Atu3587 at 643.862 kb on + strand, within Atu3587 at 643.957 kb on - strand, within Atu3587 at 643.977 kb on + strand, within Atu3587 at 643.985 kb on + strand, within Atu3587 at 644.039 kb on - strand, within Atu3587 at 644.110 kb on + strand, within Atu3587 at 644.224 kb on + strand, within Atu3587 at 644.266 kb on + strand at 644.308 kb on - strand at 644.362 kb on + strand at 644.362 kb on + strand at 644.362 kb on + strand at 644.368 kb on - strand at 644.370 kb on - strand at 644.393 kb on - strand at 644.404 kb on + strand at 644.412 kb on - strand at 644.543 kb on - strand, within Atu3588 at 644.610 kb on + strand, within Atu3588 at 644.611 kb on - strand, within Atu3588 at 644.618 kb on - strand, within Atu3588 at 644.661 kb on + strand, within Atu3588 at 644.758 kb on - strand, within Atu3588 at 645.032 kb on - strand at 645.088 kb on + strand at 645.088 kb on + strand at 645.088 kb on + strand at 645.096 kb on - strand at 645.116 kb on - strand at 645.222 kb on + strand, within Atu3589 at 645.286 kb on - strand, within Atu3589 at 645.327 kb on + strand, within Atu3589 at 645.390 kb on - strand, within Atu3589
Per-strain Table
Position Strand Gene LocusTag Fraction Propan-1-ol (C) remove 641,975 - Atu3586 0.43 -0.5 642,214 - Atu3586 0.58 -2.8 642,215 - Atu3586 0.58 -0.3 642,215 - Atu3586 0.58 -2.7 642,274 - Atu3586 0.62 -2.5 642,285 + Atu3586 0.63 -2.3 642,331 + Atu3586 0.66 -0.9 642,339 - Atu3586 0.66 -2.2 642,412 - Atu3586 0.71 -3.5 642,507 - Atu3586 0.77 -1.1 642,507 - Atu3586 0.77 -2.5 642,519 - Atu3586 0.78 -1.7 642,635 - Atu3586 0.86 -1.9 642,640 - Atu3586 0.86 -3.6 642,651 - Atu3586 0.87 -4.1 642,707 + -2.5 642,742 - -0.9 642,763 + -1.4 642,788 - -1.4 642,930 - -1.4 643,015 - -0.9 643,059 + -0.7 643,087 - -1.7 643,152 + Atu3587 0.13 -1.0 643,167 + Atu3587 0.14 -1.6 643,315 + Atu3587 0.24 -1.4 643,348 + Atu3587 0.26 -3.6 643,371 - Atu3587 0.28 -2.1 643,459 + Atu3587 0.34 -2.0 643,552 + Atu3587 0.41 -2.2 643,627 - Atu3587 0.46 -3.2 643,696 + Atu3587 0.51 -2.0 643,702 - Atu3587 0.51 -2.1 643,708 + Atu3587 0.52 -0.8 643,786 + Atu3587 0.57 -1.4 643,792 + Atu3587 0.58 -2.3 643,795 - Atu3587 0.58 -1.8 643,862 + Atu3587 0.63 -2.5 643,957 - Atu3587 0.69 -1.7 643,977 + Atu3587 0.71 -3.0 643,985 + Atu3587 0.71 -1.8 644,039 - Atu3587 0.75 -2.7 644,110 + Atu3587 0.80 -2.0 644,224 + Atu3587 0.88 -1.7 644,266 + -1.8 644,308 - -0.5 644,362 + -1.6 644,362 + -2.4 644,362 + -2.3 644,368 - -3.2 644,370 - -2.4 644,393 - +0.3 644,404 + +0.2 644,412 - +0.2 644,543 - Atu3588 0.22 +0.2 644,610 + Atu3588 0.32 -0.1 644,611 - Atu3588 0.32 +0.1 644,618 - Atu3588 0.33 -1.5 644,661 + Atu3588 0.40 +0.8 644,758 - Atu3588 0.55 +0.3 645,032 - +0.5 645,088 + -0.0 645,088 + +0.0 645,088 + -0.2 645,096 - +0.1 645,116 - +1.0 645,222 + Atu3589 0.14 -0.1 645,286 - Atu3589 0.21 +0.2 645,327 + Atu3589 0.26 +0.7 645,390 - Atu3589 0.33 -0.9
Or see this region's nucleotide sequence