Strain Fitness in Agrobacterium fabrum C58 around Atu3581

Experiment: Propan-1-ol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu3580 and Atu3581 are separated by 126 nucleotidesAtu3581 and Atu3582 are separated by 4 nucleotidesAtu3582 and Atu3583 are separated by 17 nucleotides Atu3580: Atu3580 - methylmalonyl-CoA mutase, at 634,511 to 636,652 Atu3580 Atu3581: Atu3581 - propionyl-coenzyme A carboxylase, alpha polypeptide, at 636,779 to 638,782 Atu3581 Atu3582: Atu3582 - hypothetical protein, at 638,787 to 639,206 Atu3582 Atu3583: Atu3583 - hypothetical protein, at 639,224 to 639,784 Atu3583 Position (kb) 636 637 638 639Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 635.864 kb on - strand, within Atu3580at 635.908 kb on + strand, within Atu3580at 635.909 kb on + strand, within Atu3580at 635.909 kb on + strand, within Atu3580at 636.060 kb on - strand, within Atu3580at 636.136 kb on - strand, within Atu3580at 636.199 kb on - strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.432 kb on + strand, within Atu3580at 636.440 kb on - strandat 636.440 kb on - strandat 636.440 kb on - strandat 636.497 kb on + strandat 636.534 kb on + strandat 636.542 kb on - strandat 636.542 kb on - strandat 636.559 kb on + strandat 636.559 kb on + strandat 636.565 kb on - strandat 636.626 kb on + strandat 636.669 kb on - strandat 636.806 kb on - strandat 636.808 kb on + strandat 636.816 kb on - strandat 636.816 kb on - strandat 636.826 kb on + strandat 636.898 kb on - strandat 636.972 kb on + strandat 636.975 kb on - strandat 636.993 kb on - strand, within Atu3581at 637.030 kb on + strand, within Atu3581at 637.030 kb on + strand, within Atu3581at 637.072 kb on + strand, within Atu3581at 637.165 kb on - strand, within Atu3581at 637.187 kb on + strand, within Atu3581at 637.195 kb on - strand, within Atu3581at 637.291 kb on - strand, within Atu3581at 637.531 kb on + strand, within Atu3581at 637.618 kb on - strand, within Atu3581at 637.677 kb on + strand, within Atu3581at 637.723 kb on + strand, within Atu3581at 637.788 kb on + strand, within Atu3581at 637.803 kb on - strand, within Atu3581at 637.834 kb on + strand, within Atu3581at 638.038 kb on + strand, within Atu3581at 638.107 kb on - strand, within Atu3581at 638.224 kb on + strand, within Atu3581at 638.277 kb on + strand, within Atu3581at 638.277 kb on + strand, within Atu3581at 638.315 kb on - strand, within Atu3581at 638.372 kb on - strand, within Atu3581at 638.382 kb on - strand, within Atu3581at 638.385 kb on - strand, within Atu3581at 638.599 kb on + strandat 638.601 kb on + strandat 638.601 kb on + strandat 638.601 kb on + strandat 638.607 kb on - strandat 638.609 kb on - strandat 638.628 kb on - strandat 638.638 kb on - strandat 638.638 kb on - strandat 638.688 kb on - strandat 638.877 kb on + strand, within Atu3582at 638.970 kb on + strand, within Atu3582at 639.011 kb on + strand, within Atu3582at 639.013 kb on + strand, within Atu3582at 639.016 kb on + strand, within Atu3582at 639.026 kb on + strand, within Atu3582at 639.186 kb on + strandat 639.338 kb on + strand, within Atu3583at 639.346 kb on - strand, within Atu3583at 639.346 kb on - strand, within Atu3583at 639.463 kb on + strand, within Atu3583at 639.582 kb on + strand, within Atu3583at 639.590 kb on - strand, within Atu3583at 639.743 kb on + strandat 639.748 kb on + strandat 639.756 kb on - strandat 639.756 kb on - strandat 639.756 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Propan-1-ol (C)
remove
635,864 - Atu3580 0.63 -2.6
635,908 + Atu3580 0.65 -2.9
635,909 + Atu3580 0.65 -3.7
635,909 + Atu3580 0.65 -0.3
636,060 - Atu3580 0.72 -3.6
636,136 - Atu3580 0.76 -3.0
636,199 - Atu3580 0.79 -3.6
636,432 + Atu3580 0.90 -1.6
636,432 + Atu3580 0.90 -1.7
636,432 + Atu3580 0.90 -2.6
636,432 + Atu3580 0.90 -4.0
636,432 + Atu3580 0.90 -2.6
636,432 + Atu3580 0.90 -3.3
636,432 + Atu3580 0.90 -2.1
636,432 + Atu3580 0.90 -4.7
636,432 + Atu3580 0.90 -1.1
636,432 + Atu3580 0.90 -3.5
636,440 - -3.0
636,440 - -2.3
636,440 - -3.8
636,497 + -2.1
636,534 + -3.0
636,542 - -1.4
636,542 - -5.3
636,559 + -3.5
636,559 + -4.8
636,565 - -3.0
636,626 + -2.3
636,669 - -0.6
636,806 - -0.7
636,808 + -2.4
636,816 - -2.7
636,816 - -1.7
636,826 + -0.3
636,898 - -1.7
636,972 + -3.2
636,975 - -1.6
636,993 - Atu3581 0.11 -2.1
637,030 + Atu3581 0.13 -2.4
637,030 + Atu3581 0.13 -2.7
637,072 + Atu3581 0.15 -3.3
637,165 - Atu3581 0.19 -2.3
637,187 + Atu3581 0.20 -0.4
637,195 - Atu3581 0.21 -1.2
637,291 - Atu3581 0.26 -2.0
637,531 + Atu3581 0.38 -4.4
637,618 - Atu3581 0.42 -2.8
637,677 + Atu3581 0.45 -0.9
637,723 + Atu3581 0.47 -3.1
637,788 + Atu3581 0.50 -2.5
637,803 - Atu3581 0.51 -0.5
637,834 + Atu3581 0.53 -3.7
638,038 + Atu3581 0.63 -2.5
638,107 - Atu3581 0.66 -0.6
638,224 + Atu3581 0.72 -3.4
638,277 + Atu3581 0.75 -2.7
638,277 + Atu3581 0.75 -2.4
638,315 - Atu3581 0.77 -1.5
638,372 - Atu3581 0.79 -4.3
638,382 - Atu3581 0.80 -1.5
638,385 - Atu3581 0.80 -3.1
638,599 + -1.6
638,601 + -3.3
638,601 + -0.9
638,601 + -4.7
638,607 - -3.5
638,609 - -2.1
638,628 - -3.1
638,638 - -2.4
638,638 - -3.7
638,688 - -3.5
638,877 + Atu3582 0.21 -1.6
638,970 + Atu3582 0.44 -2.6
639,011 + Atu3582 0.53 -2.2
639,013 + Atu3582 0.54 -1.5
639,016 + Atu3582 0.55 -1.1
639,026 + Atu3582 0.57 +1.4
639,186 + -1.4
639,338 + Atu3583 0.20 -2.3
639,346 - Atu3583 0.22 -1.9
639,346 - Atu3583 0.22 -1.7
639,463 + Atu3583 0.43 -3.6
639,582 + Atu3583 0.64 -2.3
639,590 - Atu3583 0.65 -1.7
639,743 + -2.1
639,748 + -1.8
639,756 - +1.4
639,756 - -2.4
639,756 - -2.0

Or see this region's nucleotide sequence