Experiment: Propan-1-ol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3529 and Atu3530 are separated by 3 nucleotides Atu3530 and Atu3531 are separated by 17 nucleotides Atu3531 and Atu3532 are separated by 22 nucleotides
Atu3529: Atu3529 - mannonate dehydratase, at 578,115 to 579,308
Atu3529
Atu3530: Atu3530 - mannitol dehydrogenase, at 579,312 to 580,784
Atu3530
Atu3531: Atu3531 - 3-oxoacyl-ACP reductase, at 580,802 to 581,542
Atu3531
Atu3532: Atu3532 - GntR family transcriptional regulator, at 581,565 to 582,314
Atu3532
Position (kb) 579
580
581 Strain fitness (log2 ratio) -1
0
1
2 at 578.312 kb on - strand, within Atu3529 at 578.501 kb on + strand, within Atu3529 at 578.509 kb on - strand, within Atu3529 at 578.510 kb on - strand, within Atu3529 at 578.684 kb on + strand, within Atu3529 at 578.743 kb on + strand, within Atu3529 at 578.751 kb on - strand, within Atu3529 at 578.944 kb on + strand, within Atu3529 at 579.042 kb on - strand, within Atu3529 at 579.112 kb on - strand, within Atu3529 at 579.130 kb on + strand, within Atu3529 at 579.132 kb on + strand, within Atu3529 at 579.207 kb on + strand at 579.221 kb on - strand at 579.221 kb on - strand at 579.221 kb on - strand at 579.265 kb on - strand at 579.317 kb on - strand at 579.354 kb on + strand at 579.362 kb on - strand at 579.362 kb on - strand at 579.407 kb on - strand at 579.486 kb on + strand, within Atu3530 at 579.491 kb on + strand, within Atu3530 at 579.494 kb on - strand, within Atu3530 at 579.519 kb on + strand, within Atu3530 at 579.556 kb on + strand, within Atu3530 at 579.561 kb on + strand, within Atu3530 at 579.669 kb on + strand, within Atu3530 at 579.736 kb on + strand, within Atu3530 at 579.743 kb on - strand, within Atu3530 at 579.826 kb on - strand, within Atu3530 at 579.858 kb on - strand, within Atu3530 at 579.906 kb on - strand, within Atu3530 at 580.040 kb on - strand, within Atu3530 at 580.052 kb on - strand, within Atu3530 at 580.196 kb on + strand, within Atu3530 at 580.204 kb on - strand, within Atu3530 at 580.231 kb on + strand, within Atu3530 at 580.247 kb on + strand, within Atu3530 at 580.257 kb on - strand, within Atu3530 at 580.389 kb on - strand, within Atu3530 at 580.422 kb on - strand, within Atu3530 at 580.446 kb on - strand, within Atu3530 at 580.551 kb on - strand, within Atu3530 at 580.574 kb on + strand, within Atu3530 at 580.574 kb on + strand, within Atu3530 at 580.641 kb on + strand at 580.715 kb on + strand at 581.049 kb on + strand, within Atu3531 at 581.099 kb on - strand, within Atu3531 at 581.179 kb on - strand, within Atu3531 at 581.231 kb on + strand, within Atu3531 at 581.239 kb on - strand, within Atu3531 at 581.273 kb on - strand, within Atu3531 at 581.330 kb on + strand, within Atu3531 at 581.373 kb on - strand, within Atu3531 at 581.536 kb on + strand at 581.550 kb on + strand at 581.625 kb on + strand at 581.680 kb on - strand, within Atu3532 at 581.691 kb on + strand, within Atu3532
Per-strain Table
Position Strand Gene LocusTag Fraction Propan-1-ol (C) remove 578,312 - Atu3529 0.16 +1.4 578,501 + Atu3529 0.32 +0.8 578,509 - Atu3529 0.33 -1.4 578,510 - Atu3529 0.33 -0.2 578,684 + Atu3529 0.48 -0.7 578,743 + Atu3529 0.53 -0.6 578,751 - Atu3529 0.53 -0.1 578,944 + Atu3529 0.69 +1.1 579,042 - Atu3529 0.78 -0.0 579,112 - Atu3529 0.84 +0.0 579,130 + Atu3529 0.85 +0.1 579,132 + Atu3529 0.85 -0.9 579,207 + -1.6 579,221 - -0.3 579,221 - -0.5 579,221 - -0.3 579,265 - +0.1 579,317 - -0.9 579,354 + -0.5 579,362 - -0.2 579,362 - -0.1 579,407 - -0.2 579,486 + Atu3530 0.12 +0.9 579,491 + Atu3530 0.12 +0.8 579,494 - Atu3530 0.12 +0.1 579,519 + Atu3530 0.14 +0.6 579,556 + Atu3530 0.17 +2.4 579,561 + Atu3530 0.17 -0.6 579,669 + Atu3530 0.24 +1.8 579,736 + Atu3530 0.29 +0.5 579,743 - Atu3530 0.29 +0.3 579,826 - Atu3530 0.35 +0.6 579,858 - Atu3530 0.37 -0.0 579,906 - Atu3530 0.40 +0.2 580,040 - Atu3530 0.49 -0.2 580,052 - Atu3530 0.50 +0.2 580,196 + Atu3530 0.60 +0.9 580,204 - Atu3530 0.61 +0.5 580,231 + Atu3530 0.62 +0.6 580,247 + Atu3530 0.63 +0.9 580,257 - Atu3530 0.64 +0.1 580,389 - Atu3530 0.73 +0.4 580,422 - Atu3530 0.75 -0.0 580,446 - Atu3530 0.77 +0.6 580,551 - Atu3530 0.84 +0.6 580,574 + Atu3530 0.86 -0.3 580,574 + Atu3530 0.86 +1.4 580,641 + +0.1 580,715 + -0.2 581,049 + Atu3531 0.33 -0.3 581,099 - Atu3531 0.40 +0.3 581,179 - Atu3531 0.51 -0.1 581,231 + Atu3531 0.58 +0.5 581,239 - Atu3531 0.59 -0.1 581,273 - Atu3531 0.64 -0.2 581,330 + Atu3531 0.71 +0.4 581,373 - Atu3531 0.77 +0.0 581,536 + -0.1 581,550 + -0.1 581,625 + -0.0 581,680 - Atu3532 0.15 +0.2 581,691 + Atu3532 0.17 -1.2
Or see this region's nucleotide sequence