Experiment: Propan-1-ol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3148 and Atu3149 are separated by 9 nucleotides Atu3149 and Atu3150 overlap by 4 nucleotides
Atu3148: Atu3148 - sugar ABC transporter ATPase, at 156,393 to 157,478
Atu3148
Atu3149: Atu3149 - sugar ABC transporter permease, at 157,488 to 158,324
Atu3149
Atu3150: Atu3150 - sugar ABC transporter permease, at 158,321 to 159,181
Atu3150
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2 at 156.536 kb on - strand, within Atu3148 at 156.536 kb on - strand, within Atu3148 at 156.546 kb on - strand, within Atu3148 at 156.625 kb on - strand, within Atu3148 at 156.665 kb on + strand, within Atu3148 at 156.678 kb on + strand, within Atu3148 at 156.895 kb on + strand, within Atu3148 at 156.901 kb on - strand, within Atu3148 at 156.901 kb on - strand, within Atu3148 at 156.925 kb on + strand, within Atu3148 at 157.100 kb on - strand, within Atu3148 at 157.113 kb on - strand, within Atu3148 at 157.156 kb on + strand, within Atu3148 at 157.164 kb on - strand, within Atu3148 at 157.164 kb on - strand, within Atu3148 at 157.395 kb on + strand at 157.485 kb on + strand at 157.512 kb on - strand at 157.574 kb on - strand, within Atu3149 at 157.574 kb on - strand, within Atu3149 at 157.574 kb on - strand, within Atu3149 at 157.579 kb on - strand, within Atu3149 at 157.579 kb on - strand, within Atu3149 at 157.603 kb on + strand, within Atu3149 at 157.632 kb on + strand, within Atu3149 at 157.640 kb on - strand, within Atu3149 at 157.789 kb on + strand, within Atu3149 at 157.839 kb on - strand, within Atu3149 at 157.872 kb on - strand, within Atu3149 at 157.965 kb on - strand, within Atu3149 at 157.975 kb on - strand, within Atu3149 at 158.071 kb on + strand, within Atu3149 at 158.220 kb on - strand, within Atu3149 at 158.342 kb on - strand at 158.372 kb on - strand at 158.455 kb on - strand, within Atu3150 at 158.562 kb on + strand, within Atu3150 at 158.562 kb on + strand, within Atu3150 at 158.580 kb on - strand, within Atu3150 at 158.687 kb on - strand, within Atu3150 at 158.778 kb on + strand, within Atu3150 at 158.783 kb on - strand, within Atu3150 at 158.925 kb on + strand, within Atu3150 at 159.007 kb on - strand, within Atu3150 at 159.057 kb on + strand, within Atu3150 at 159.111 kb on + strand at 159.119 kb on - strand at 159.253 kb on - strand at 159.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Propan-1-ol (C) remove 156,536 - Atu3148 0.13 +0.2 156,536 - Atu3148 0.13 -0.6 156,546 - Atu3148 0.14 -0.3 156,625 - Atu3148 0.21 -0.5 156,665 + Atu3148 0.25 -0.7 156,678 + Atu3148 0.26 +0.0 156,895 + Atu3148 0.46 +2.0 156,901 - Atu3148 0.47 -0.1 156,901 - Atu3148 0.47 +0.3 156,925 + Atu3148 0.49 +0.4 157,100 - Atu3148 0.65 +0.4 157,113 - Atu3148 0.66 +0.3 157,156 + Atu3148 0.70 -0.2 157,164 - Atu3148 0.71 -0.1 157,164 - Atu3148 0.71 +0.8 157,395 + +0.2 157,485 + -0.8 157,512 - -2.0 157,574 - Atu3149 0.10 -0.1 157,574 - Atu3149 0.10 +0.8 157,574 - Atu3149 0.10 +0.5 157,579 - Atu3149 0.11 -1.8 157,579 - Atu3149 0.11 -0.7 157,603 + Atu3149 0.14 -1.1 157,632 + Atu3149 0.17 +0.8 157,640 - Atu3149 0.18 +0.2 157,789 + Atu3149 0.36 +0.6 157,839 - Atu3149 0.42 -0.6 157,872 - Atu3149 0.46 -0.2 157,965 - Atu3149 0.57 +0.2 157,975 - Atu3149 0.58 -0.4 158,071 + Atu3149 0.70 -0.0 158,220 - Atu3149 0.87 -0.3 158,342 - -2.1 158,372 - +0.6 158,455 - Atu3150 0.16 -1.8 158,562 + Atu3150 0.28 +1.2 158,562 + Atu3150 0.28 -0.2 158,580 - Atu3150 0.30 -0.3 158,687 - Atu3150 0.43 -1.4 158,778 + Atu3150 0.53 -0.1 158,783 - Atu3150 0.54 +1.2 158,925 + Atu3150 0.70 -0.1 159,007 - Atu3150 0.80 -0.1 159,057 + Atu3150 0.85 -0.2 159,111 + -0.5 159,119 - -1.6 159,253 - -0.0 159,285 - -1.6
Or see this region's nucleotide sequence