Experiment: Propan-1-ol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0129 and Atu0130 are separated by 4 nucleotides Atu0130 and Atu0131 overlap by 1 nucleotides Atu0131 and Atu0132 are separated by 2 nucleotides Atu0132 and Atu0133 overlap by 4 nucleotides
Atu0129: Atu0129 - ABC transporter, membrane spanning protein (sugar/ribonucleotide), at 133,676 to 134,647
Atu0129
Atu0130: Atu0130 - cytidine deaminase, at 134,652 to 135,056
Atu0130
Atu0131: Atu0131 - purine nucleoside phosphorylase, at 135,056 to 135,856
Atu0131
Atu0132: Atu0132 - 2-deoxyribose-5-phosphate aldolase, at 135,859 to 136,632
Atu0132
Atu0133: Atu0133 - thymidine phosphorylase, at 136,629 to 137,945
Atu0133
Position (kb) 135
136 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 134.150 kb on + strand, within Atu0129 at 134.150 kb on + strand, within Atu0129 at 134.158 kb on - strand, within Atu0129 at 134.185 kb on + strand, within Atu0129 at 134.195 kb on + strand, within Atu0129 at 134.195 kb on + strand, within Atu0129 at 134.203 kb on - strand, within Atu0129 at 134.253 kb on - strand, within Atu0129 at 134.392 kb on + strand, within Atu0129 at 134.392 kb on + strand, within Atu0129 at 134.392 kb on + strand, within Atu0129 at 134.392 kb on + strand, within Atu0129 at 134.402 kb on - strand, within Atu0129 at 134.416 kb on + strand, within Atu0129 at 134.500 kb on + strand, within Atu0129 at 134.561 kb on + strand at 134.561 kb on + strand at 134.569 kb on - strand at 134.569 kb on - strand at 134.569 kb on - strand at 134.616 kb on - strand at 134.671 kb on + strand at 134.808 kb on + strand, within Atu0130 at 134.808 kb on + strand, within Atu0130 at 134.808 kb on + strand, within Atu0130 at 134.860 kb on - strand, within Atu0130 at 135.035 kb on + strand at 135.048 kb on - strand at 135.063 kb on - strand at 135.099 kb on + strand at 135.107 kb on - strand at 135.107 kb on - strand at 135.130 kb on - strand at 135.130 kb on - strand at 135.183 kb on + strand, within Atu0131 at 135.238 kb on + strand, within Atu0131 at 135.266 kb on + strand, within Atu0131 at 135.363 kb on + strand, within Atu0131 at 135.521 kb on + strand, within Atu0131 at 135.656 kb on - strand, within Atu0131 at 135.764 kb on + strand, within Atu0131 at 135.764 kb on + strand, within Atu0131 at 135.772 kb on - strand, within Atu0131 at 135.772 kb on - strand, within Atu0131 at 135.815 kb on - strand at 135.864 kb on + strand at 135.913 kb on - strand at 135.920 kb on + strand at 135.938 kb on - strand, within Atu0132 at 136.032 kb on - strand, within Atu0132 at 136.037 kb on - strand, within Atu0132 at 136.075 kb on - strand, within Atu0132 at 136.135 kb on + strand, within Atu0132 at 136.221 kb on + strand, within Atu0132 at 136.233 kb on + strand, within Atu0132 at 136.260 kb on + strand, within Atu0132 at 136.293 kb on + strand, within Atu0132 at 136.308 kb on - strand, within Atu0132 at 136.349 kb on - strand, within Atu0132 at 136.430 kb on + strand, within Atu0132 at 136.495 kb on - strand, within Atu0132 at 136.497 kb on - strand, within Atu0132 at 136.524 kb on + strand, within Atu0132 at 136.524 kb on + strand, within Atu0132
Per-strain Table
Position Strand Gene LocusTag Fraction Propan-1-ol (C) remove 134,150 + Atu0129 0.49 +0.1 134,150 + Atu0129 0.49 -1.1 134,158 - Atu0129 0.50 -0.9 134,185 + Atu0129 0.52 +0.1 134,195 + Atu0129 0.53 +0.0 134,195 + Atu0129 0.53 +0.7 134,203 - Atu0129 0.54 +0.0 134,253 - Atu0129 0.59 -0.3 134,392 + Atu0129 0.74 +0.2 134,392 + Atu0129 0.74 -0.2 134,392 + Atu0129 0.74 +0.0 134,392 + Atu0129 0.74 +0.5 134,402 - Atu0129 0.75 -0.2 134,416 + Atu0129 0.76 -0.1 134,500 + Atu0129 0.85 +0.2 134,561 + +0.5 134,561 + +0.4 134,569 - -0.7 134,569 - +0.1 134,569 - +0.6 134,616 - +0.2 134,671 + -0.0 134,808 + Atu0130 0.39 +0.2 134,808 + Atu0130 0.39 +0.7 134,808 + Atu0130 0.39 -2.6 134,860 - Atu0130 0.51 +0.5 135,035 + +0.8 135,048 - +0.4 135,063 - +1.5 135,099 + -0.6 135,107 - -0.8 135,107 - -0.0 135,130 - +0.5 135,130 - -0.2 135,183 + Atu0131 0.16 -1.1 135,238 + Atu0131 0.23 -0.4 135,266 + Atu0131 0.26 -0.8 135,363 + Atu0131 0.38 -0.2 135,521 + Atu0131 0.58 -0.4 135,656 - Atu0131 0.75 +0.1 135,764 + Atu0131 0.88 -1.6 135,764 + Atu0131 0.88 +0.2 135,772 - Atu0131 0.89 -0.1 135,772 - Atu0131 0.89 -0.5 135,815 - -1.1 135,864 + -0.1 135,913 - -1.1 135,920 + -0.4 135,938 - Atu0132 0.10 +0.3 136,032 - Atu0132 0.22 +0.2 136,037 - Atu0132 0.23 +0.4 136,075 - Atu0132 0.28 +0.3 136,135 + Atu0132 0.36 +2.8 136,221 + Atu0132 0.47 +0.0 136,233 + Atu0132 0.48 -0.5 136,260 + Atu0132 0.52 +1.8 136,293 + Atu0132 0.56 -0.6 136,308 - Atu0132 0.58 -0.8 136,349 - Atu0132 0.63 +0.0 136,430 + Atu0132 0.74 -0.6 136,495 - Atu0132 0.82 -0.0 136,497 - Atu0132 0.82 +0.2 136,524 + Atu0132 0.86 -0.8 136,524 + Atu0132 0.86 -0.0
Or see this region's nucleotide sequence