Strain Fitness in Agrobacterium fabrum C58 around Atu0020

Experiment: Propan-1-ol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0018 and Atu0019 are separated by 4 nucleotidesAtu0019 and Atu0020 are separated by 27 nucleotidesAtu0020 and Atu0021 are separated by 122 nucleotides Atu0018: Atu0018 - tryptophan synthase beta subunit, at 15,139 to 16,359 Atu0018 Atu0019: Atu0019 - tryptophan synthase alpha subunit, at 16,364 to 17,203 Atu0019 Atu0020: Atu0020 - acetyl-coenzyme A carboxyl transferase, beta subunit, at 17,231 to 18,127 Atu0020 Atu0021: Atu0021 - folylpolyglutamate synthase, at 18,250 to 19,593 Atu0021 Position (kb) 17 18 19Strain fitness (log2 ratio) -1 0 1at 18.168 kb on - strandat 18.174 kb on + strandat 18.180 kb on - strandat 18.182 kb on - strandat 18.229 kb on + strandat 18.242 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Propan-1-ol (C)
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18,168 - -0.4
18,174 + -0.1
18,180 - -0.1
18,182 - +0.4
18,229 + -0.2
18,242 + -0.8

Or see this region's nucleotide sequence