Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04260 and PS417_04265 are separated by 51 nucleotides PS417_04265 and PS417_04270 are separated by 70 nucleotides PS417_04270 and PS417_04275 are separated by 76 nucleotides
PS417_04260: PS417_04260 - rod shape-determining protein MreD, at 954,118 to 954,606
_04260
PS417_04265: PS417_04265 - septum formation protein Maf, at 954,658 to 955,254
_04265
PS417_04270: PS417_04270 - ribonuclease G, at 955,325 to 956,782
_04270
PS417_04275: PS417_04275 - hypothetical protein, at 956,859 to 960,674
_04275
Position (kb) 955
956
957 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 954.521 kb on + strand, within PS417_04260 at 954.642 kb on - strand at 954.766 kb on - strand, within PS417_04265 at 954.899 kb on + strand, within PS417_04265 at 955.034 kb on + strand, within PS417_04265 at 955.072 kb on + strand, within PS417_04265 at 955.073 kb on - strand, within PS417_04265 at 955.117 kb on - strand, within PS417_04265 at 955.117 kb on - strand, within PS417_04265 at 955.136 kb on + strand, within PS417_04265 at 955.136 kb on + strand, within PS417_04265 at 955.137 kb on - strand, within PS417_04265 at 955.137 kb on - strand, within PS417_04265 at 955.137 kb on - strand, within PS417_04265 at 955.137 kb on - strand, within PS417_04265 at 955.279 kb on + strand at 955.280 kb on - strand at 955.448 kb on + strand at 955.448 kb on + strand at 955.448 kb on + strand at 955.449 kb on - strand at 955.449 kb on - strand at 955.449 kb on - strand at 955.691 kb on + strand, within PS417_04270 at 955.691 kb on + strand, within PS417_04270 at 955.691 kb on + strand, within PS417_04270 at 955.692 kb on - strand, within PS417_04270 at 955.717 kb on + strand, within PS417_04270 at 955.940 kb on + strand at 955.966 kb on + strand, within PS417_04270 at 956.120 kb on + strand, within PS417_04270 at 956.391 kb on + strand, within PS417_04270 at 956.391 kb on + strand, within PS417_04270 at 956.392 kb on - strand, within PS417_04270 at 956.392 kb on - strand, within PS417_04270 at 956.511 kb on + strand, within PS417_04270 at 956.630 kb on + strand, within PS417_04270 at 956.630 kb on + strand, within PS417_04270 at 956.747 kb on + strand at 956.747 kb on + strand at 956.802 kb on + strand at 956.943 kb on + strand at 956.943 kb on + strand at 956.943 kb on + strand at 956.943 kb on + strand at 956.944 kb on - strand at 956.944 kb on - strand at 956.944 kb on - strand at 957.156 kb on - strand at 957.396 kb on + strand, within PS417_04275 at 957.396 kb on + strand, within PS417_04275 at 957.396 kb on + strand, within PS417_04275 at 957.396 kb on + strand, within PS417_04275 at 957.396 kb on + strand, within PS417_04275 at 957.397 kb on - strand at 957.397 kb on - strand, within PS417_04275 at 957.397 kb on - strand, within PS417_04275 at 957.397 kb on - strand, within PS417_04275 at 957.397 kb on - strand, within PS417_04275 at 957.498 kb on - strand at 957.537 kb on + strand, within PS417_04275 at 957.705 kb on + strand, within PS417_04275
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 954,521 + PS417_04260 0.82 +1.9 954,642 - +0.4 954,766 - PS417_04265 0.18 +0.4 954,899 + PS417_04265 0.40 +0.2 955,034 + PS417_04265 0.63 -0.0 955,072 + PS417_04265 0.69 +0.2 955,073 - PS417_04265 0.70 -0.2 955,117 - PS417_04265 0.77 -1.9 955,117 - PS417_04265 0.77 -0.6 955,136 + PS417_04265 0.80 +2.2 955,136 + PS417_04265 0.80 -0.0 955,137 - PS417_04265 0.80 -1.5 955,137 - PS417_04265 0.80 +0.4 955,137 - PS417_04265 0.80 -0.6 955,137 - PS417_04265 0.80 -0.6 955,279 + +0.4 955,280 - -0.0 955,448 + -2.6 955,448 + -2.1 955,448 + -2.3 955,449 - -0.5 955,449 - -3.5 955,449 - +0.1 955,691 + PS417_04270 0.25 -2.1 955,691 + PS417_04270 0.25 -4.5 955,691 + PS417_04270 0.25 -1.9 955,692 - PS417_04270 0.25 -3.2 955,717 + PS417_04270 0.27 -2.6 955,940 + +0.2 955,966 + PS417_04270 0.44 +1.2 956,120 + PS417_04270 0.55 -1.4 956,391 + PS417_04270 0.73 +0.1 956,391 + PS417_04270 0.73 +1.5 956,392 - PS417_04270 0.73 -1.2 956,392 - PS417_04270 0.73 -2.2 956,511 + PS417_04270 0.81 -2.1 956,630 + PS417_04270 0.90 -3.7 956,630 + PS417_04270 0.90 -3.1 956,747 + -0.4 956,747 + -2.8 956,802 + +1.5 956,943 + -1.3 956,943 + -0.4 956,943 + -1.0 956,943 + +0.4 956,944 - -0.8 956,944 - -1.5 956,944 - +0.8 957,156 - +3.8 957,396 + PS417_04275 0.14 -2.1 957,396 + PS417_04275 0.14 -0.3 957,396 + PS417_04275 0.14 -0.4 957,396 + PS417_04275 0.14 -0.5 957,396 + PS417_04275 0.14 +0.0 957,397 - +0.1 957,397 - PS417_04275 0.14 +0.2 957,397 - PS417_04275 0.14 +2.2 957,397 - PS417_04275 0.14 -0.9 957,397 - PS417_04275 0.14 -1.3 957,498 - +1.7 957,537 + PS417_04275 0.18 -0.4 957,705 + PS417_04275 0.22 +2.8
Or see this region's nucleotide sequence