Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03900 and PS417_03905 are separated by 199 nucleotides PS417_03905 and PS417_03910 are separated by 35 nucleotides PS417_03910 and PS417_03915 are separated by 48 nucleotides PS417_03915 and PS417_03920 are separated by 145 nucleotides PS417_03920 and PS417_03925 are separated by 47 nucleotides
PS417_03900: PS417_03900 - type II secretion system protein F, at 872,310 to 873,518
_03900
PS417_03905: PS417_03905 - fimbrial protein, at 873,718 to 874,134
_03905
PS417_03910: PS417_03910 - pilus assembly protein, at 874,170 to 875,570
_03910
PS417_03915: PS417_03915 - tRNA-Thr, at 875,619 to 875,691
_03915
PS417_03920: PS417_03920 - dephospho-CoA kinase, at 875,837 to 876,142
_03920
PS417_03925: PS417_03925 - nicotinate-nucleotide pyrophosphorylase, at 876,190 to 877,038
_03925
Position (kb) 874
875
876 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 873.281 kb on + strand, within PS417_03900 at 873.553 kb on + strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.558 kb on + strand at 873.559 kb on - strand at 873.648 kb on - strand at 873.663 kb on + strand at 873.701 kb on + strand at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 874.099 kb on + strand at 874.099 kb on + strand at 874.139 kb on + strand at 874.569 kb on + strand, within PS417_03910 at 874.569 kb on + strand, within PS417_03910 at 874.570 kb on - strand, within PS417_03910 at 874.576 kb on - strand, within PS417_03910 at 874.576 kb on - strand, within PS417_03910 at 874.749 kb on - strand, within PS417_03910 at 874.922 kb on + strand, within PS417_03910 at 874.922 kb on + strand, within PS417_03910 at 874.922 kb on + strand, within PS417_03910 at 874.923 kb on - strand, within PS417_03910 at 875.027 kb on + strand, within PS417_03910 at 875.027 kb on + strand, within PS417_03910 at 875.027 kb on + strand, within PS417_03910 at 875.027 kb on + strand, within PS417_03910 at 875.028 kb on - strand, within PS417_03910 at 875.028 kb on - strand at 875.090 kb on + strand, within PS417_03910 at 875.090 kb on + strand, within PS417_03910 at 875.091 kb on - strand, within PS417_03910 at 875.210 kb on + strand, within PS417_03910 at 875.318 kb on + strand, within PS417_03910 at 875.319 kb on - strand, within PS417_03910 at 875.319 kb on - strand, within PS417_03910 at 875.372 kb on - strand, within PS417_03910 at 875.372 kb on - strand, within PS417_03910 at 875.505 kb on + strand at 875.604 kb on + strand at 875.604 kb on + strand at 875.627 kb on - strand, within PS417_03915 at 875.627 kb on - strand, within PS417_03915 at 875.627 kb on - strand, within PS417_03915 at 875.711 kb on - strand at 875.780 kb on - strand at 875.826 kb on - strand at 875.892 kb on - strand, within PS417_03920 at 876.000 kb on - strand, within PS417_03920 at 876.026 kb on + strand, within PS417_03920 at 876.026 kb on + strand, within PS417_03920 at 876.027 kb on - strand, within PS417_03920 at 876.073 kb on + strand, within PS417_03920 at 876.114 kb on - strand at 876.257 kb on + strand at 876.257 kb on + strand at 876.257 kb on + strand at 876.258 kb on - strand at 876.258 kb on - strand at 876.258 kb on - strand at 876.258 kb on - strand at 876.360 kb on + strand, within PS417_03925 at 876.361 kb on - strand, within PS417_03925 at 876.548 kb on + strand, within PS417_03925 at 876.548 kb on + strand, within PS417_03925 at 876.549 kb on - strand, within PS417_03925
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 873,281 + PS417_03900 0.80 -0.4 873,553 + +0.0 873,554 - -1.2 873,554 - -1.1 873,554 - +1.6 873,554 - -1.3 873,554 - -0.7 873,558 + -1.7 873,559 - -0.0 873,648 - -0.3 873,663 + -0.9 873,701 + -1.0 873,806 - PS417_03905 0.21 +0.3 873,806 - PS417_03905 0.21 -0.3 873,806 - PS417_03905 0.21 -0.8 873,806 - PS417_03905 0.21 +0.5 873,806 - PS417_03905 0.21 +0.0 874,099 + -0.0 874,099 + +1.0 874,139 + +0.1 874,569 + PS417_03910 0.28 -0.5 874,569 + PS417_03910 0.28 -0.3 874,570 - PS417_03910 0.29 +0.3 874,576 - PS417_03910 0.29 -1.3 874,576 - PS417_03910 0.29 +0.5 874,749 - PS417_03910 0.41 +0.9 874,922 + PS417_03910 0.54 +2.0 874,922 + PS417_03910 0.54 -0.3 874,922 + PS417_03910 0.54 +0.1 874,923 - PS417_03910 0.54 +0.3 875,027 + PS417_03910 0.61 +1.2 875,027 + PS417_03910 0.61 -0.4 875,027 + PS417_03910 0.61 +1.2 875,027 + PS417_03910 0.61 +1.0 875,028 - PS417_03910 0.61 -0.4 875,028 - +1.2 875,090 + PS417_03910 0.66 -1.0 875,090 + PS417_03910 0.66 -0.9 875,091 - PS417_03910 0.66 -0.7 875,210 + PS417_03910 0.74 +1.6 875,318 + PS417_03910 0.82 +0.0 875,319 - PS417_03910 0.82 +0.3 875,319 - PS417_03910 0.82 +0.8 875,372 - PS417_03910 0.86 +1.6 875,372 - PS417_03910 0.86 +0.0 875,505 + -0.0 875,604 + -0.3 875,604 + -0.0 875,627 - PS417_03915 0.11 +2.5 875,627 - PS417_03915 0.11 -0.3 875,627 - PS417_03915 0.11 +0.5 875,711 - -0.2 875,780 - +0.4 875,826 - -0.8 875,892 - PS417_03920 0.18 -1.7 876,000 - PS417_03920 0.53 +0.4 876,026 + PS417_03920 0.62 -0.2 876,026 + PS417_03920 0.62 +0.0 876,027 - PS417_03920 0.62 +0.6 876,073 + PS417_03920 0.77 +3.0 876,114 - -2.0 876,257 + -0.5 876,257 + +0.6 876,257 + -0.4 876,258 - -0.3 876,258 - -1.4 876,258 - -1.1 876,258 - -2.1 876,360 + PS417_03925 0.20 -0.7 876,361 - PS417_03925 0.20 -1.2 876,548 + PS417_03925 0.42 +4.9 876,548 + PS417_03925 0.42 -0.3 876,549 - PS417_03925 0.42 +0.4
Or see this region's nucleotide sequence