Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03195 and PS417_03200 are separated by 137 nucleotides PS417_03200 and PS417_03205 are separated by 24 nucleotides PS417_03205 and PS417_03210 are separated by 194 nucleotides
PS417_03195: PS417_03195 - LysR family transcriptional regulator, at 730,889 to 731,815
_03195
PS417_03200: PS417_03200 - ArsR family transcriptional regulator, at 731,953 to 732,642
_03200
PS417_03205: PS417_03205 - adenine deaminase, at 732,667 to 733,620
_03205
PS417_03210: PS417_03210 - calcium:proton antiporter, at 733,815 to 734,906
_03210
Position (kb) 732
733
734 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 731.813 kb on + strand at 731.863 kb on - strand at 731.902 kb on - strand at 731.903 kb on + strand at 731.904 kb on - strand at 731.904 kb on - strand at 731.916 kb on - strand at 732.288 kb on - strand, within PS417_03200 at 732.344 kb on - strand, within PS417_03200 at 732.471 kb on + strand, within PS417_03200 at 732.472 kb on - strand, within PS417_03200 at 732.472 kb on - strand, within PS417_03200 at 732.472 kb on - strand at 732.645 kb on + strand at 732.645 kb on + strand at 732.646 kb on - strand at 732.646 kb on - strand at 732.646 kb on - strand at 732.669 kb on - strand at 732.677 kb on - strand at 732.773 kb on + strand, within PS417_03205 at 733.013 kb on + strand, within PS417_03205 at 733.014 kb on - strand, within PS417_03205 at 733.397 kb on + strand, within PS417_03205 at 733.397 kb on + strand, within PS417_03205 at 733.397 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.437 kb on - strand, within PS417_03205 at 733.437 kb on - strand, within PS417_03205 at 733.439 kb on + strand, within PS417_03205 at 733.440 kb on - strand, within PS417_03205 at 733.464 kb on + strand, within PS417_03205 at 733.476 kb on - strand, within PS417_03205 at 733.736 kb on + strand at 733.737 kb on - strand at 733.774 kb on + strand at 733.802 kb on + strand at 733.802 kb on + strand at 734.124 kb on + strand, within PS417_03210 at 734.125 kb on - strand, within PS417_03210 at 734.230 kb on - strand, within PS417_03210 at 734.343 kb on + strand, within PS417_03210 at 734.343 kb on + strand, within PS417_03210 at 734.343 kb on + strand, within PS417_03210 at 734.343 kb on + strand at 734.343 kb on + strand, within PS417_03210 at 734.343 kb on + strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.382 kb on + strand, within PS417_03210 at 734.382 kb on + strand, within PS417_03210 at 734.394 kb on + strand, within PS417_03210
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 731,813 + -0.6 731,863 - +8.9 731,902 - -0.2 731,903 + -0.6 731,904 - +1.5 731,904 - +1.0 731,916 - +0.5 732,288 - PS417_03200 0.49 +0.7 732,344 - PS417_03200 0.57 +0.1 732,471 + PS417_03200 0.75 -0.8 732,472 - PS417_03200 0.75 +0.6 732,472 - PS417_03200 0.75 +0.7 732,472 - +1.2 732,645 + +2.2 732,645 + -0.2 732,646 - -0.2 732,646 - -0.0 732,646 - +2.4 732,669 - -0.2 732,677 - -0.4 732,773 + PS417_03205 0.11 +7.8 733,013 + PS417_03205 0.36 -1.0 733,014 - PS417_03205 0.36 -0.2 733,397 + PS417_03205 0.77 -0.6 733,397 + PS417_03205 0.77 +0.3 733,397 + PS417_03205 0.77 +0.6 733,436 + PS417_03205 0.81 +0.9 733,436 + PS417_03205 0.81 -1.7 733,436 + PS417_03205 0.81 +1.7 733,436 + PS417_03205 0.81 -0.2 733,436 + PS417_03205 0.81 -0.5 733,436 + PS417_03205 0.81 -0.4 733,436 + PS417_03205 0.81 -1.4 733,437 - PS417_03205 0.81 +0.3 733,437 - PS417_03205 0.81 -0.6 733,439 + PS417_03205 0.81 -1.8 733,440 - PS417_03205 0.81 +2.2 733,464 + PS417_03205 0.84 +0.3 733,476 - PS417_03205 0.85 -0.6 733,736 + -2.0 733,737 - +0.4 733,774 + +1.2 733,802 + -0.4 733,802 + -1.3 734,124 + PS417_03210 0.28 -0.3 734,125 - PS417_03210 0.28 +2.3 734,230 - PS417_03210 0.38 -1.6 734,343 + PS417_03210 0.48 +0.5 734,343 + PS417_03210 0.48 +0.1 734,343 + PS417_03210 0.48 +0.3 734,343 + +0.5 734,343 + PS417_03210 0.48 +0.5 734,343 + PS417_03210 0.48 +0.1 734,344 - PS417_03210 0.48 -0.1 734,344 - PS417_03210 0.48 -0.4 734,344 - PS417_03210 0.48 -0.0 734,344 - PS417_03210 0.48 +0.5 734,344 - PS417_03210 0.48 -0.7 734,382 + PS417_03210 0.52 -0.2 734,382 + PS417_03210 0.52 -1.0 734,394 + PS417_03210 0.53 -2.5
Or see this region's nucleotide sequence