Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23940 and PS417_23945 are separated by 291 nucleotides PS417_23945 and PS417_23950 are separated by 295 nucleotides
PS417_23940: PS417_23940 - hypothetical protein, at 5,182,171 to 5,185,089
_23940
PS417_23945: PS417_23945 - ornithine aminotransferase, at 5,185,381 to 5,186,001
_23945
PS417_23950: PS417_23950 - polynucleotide phosphorylase/polyadenylase, at 5,186,297 to 5,188,402
_23950
Position (kb) 5185
5186
5187 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9
10 at 5184.490 kb on - strand, within PS417_23940 at 5184.537 kb on - strand, within PS417_23940 at 5184.537 kb on - strand, within PS417_23940 at 5184.709 kb on + strand, within PS417_23940 at 5184.715 kb on + strand, within PS417_23940 at 5184.715 kb on + strand, within PS417_23940 at 5184.715 kb on + strand, within PS417_23940 at 5184.716 kb on - strand, within PS417_23940 at 5184.716 kb on - strand, within PS417_23940 at 5184.716 kb on - strand, within PS417_23940 at 5184.716 kb on - strand, within PS417_23940 at 5184.716 kb on - strand, within PS417_23940 at 5184.718 kb on + strand, within PS417_23940 at 5184.718 kb on + strand, within PS417_23940 at 5184.719 kb on - strand, within PS417_23940 at 5184.719 kb on - strand, within PS417_23940 at 5184.814 kb on + strand at 5184.815 kb on - strand at 5184.915 kb on + strand at 5185.013 kb on - strand at 5185.101 kb on + strand at 5185.101 kb on + strand at 5185.101 kb on + strand at 5185.156 kb on + strand at 5185.176 kb on + strand at 5185.177 kb on - strand at 5185.220 kb on - strand at 5185.242 kb on + strand at 5185.242 kb on + strand at 5185.242 kb on + strand at 5185.242 kb on + strand at 5185.242 kb on + strand at 5185.242 kb on + strand at 5185.243 kb on - strand at 5185.243 kb on - strand at 5185.243 kb on - strand at 5185.275 kb on + strand at 5185.334 kb on + strand at 5185.334 kb on + strand at 5185.334 kb on + strand at 5185.334 kb on + strand at 5185.334 kb on + strand at 5185.334 kb on + strand at 5185.334 kb on + strand at 5185.335 kb on - strand at 5185.345 kb on - strand at 5185.498 kb on + strand, within PS417_23945 at 5185.499 kb on - strand, within PS417_23945 at 5185.524 kb on + strand, within PS417_23945 at 5185.693 kb on + strand, within PS417_23945 at 5185.693 kb on + strand, within PS417_23945 at 5185.693 kb on + strand, within PS417_23945 at 5185.721 kb on - strand, within PS417_23945 at 5185.750 kb on - strand, within PS417_23945 at 5185.750 kb on - strand, within PS417_23945 at 5185.753 kb on + strand, within PS417_23945 at 5185.753 kb on + strand, within PS417_23945 at 5185.753 kb on + strand, within PS417_23945 at 5185.753 kb on + strand at 5185.753 kb on + strand, within PS417_23945 at 5185.754 kb on - strand, within PS417_23945 at 5185.754 kb on - strand, within PS417_23945 at 5185.754 kb on - strand, within PS417_23945 at 5185.754 kb on - strand, within PS417_23945 at 5185.872 kb on + strand, within PS417_23945 at 5185.890 kb on + strand, within PS417_23945 at 5185.981 kb on - strand at 5186.001 kb on + strand at 5186.001 kb on + strand at 5186.002 kb on - strand at 5186.008 kb on - strand at 5186.008 kb on - strand at 5186.008 kb on - strand at 5186.325 kb on - strand at 5186.526 kb on + strand, within PS417_23950 at 5186.526 kb on + strand, within PS417_23950 at 5186.527 kb on - strand, within PS417_23950
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 5,184,490 - PS417_23940 0.79 -0.3 5,184,537 - PS417_23940 0.81 +0.2 5,184,537 - PS417_23940 0.81 +0.5 5,184,709 + PS417_23940 0.87 +1.5 5,184,715 + PS417_23940 0.87 -0.2 5,184,715 + PS417_23940 0.87 +0.3 5,184,715 + PS417_23940 0.87 +0.0 5,184,716 - PS417_23940 0.87 -0.3 5,184,716 - PS417_23940 0.87 +0.0 5,184,716 - PS417_23940 0.87 -0.3 5,184,716 - PS417_23940 0.87 +0.1 5,184,716 - PS417_23940 0.87 +0.8 5,184,718 + PS417_23940 0.87 +0.8 5,184,718 + PS417_23940 0.87 +0.0 5,184,719 - PS417_23940 0.87 +1.7 5,184,719 - PS417_23940 0.87 -1.0 5,184,814 + -0.2 5,184,815 - +0.1 5,184,915 + +0.6 5,185,013 - +1.3 5,185,101 + +1.1 5,185,101 + -0.1 5,185,101 + +1.7 5,185,156 + -0.2 5,185,176 + +0.6 5,185,177 - +0.4 5,185,220 - +0.6 5,185,242 + -0.0 5,185,242 + +0.1 5,185,242 + +0.2 5,185,242 + +1.3 5,185,242 + +0.5 5,185,242 + -0.1 5,185,243 - +0.5 5,185,243 - -0.9 5,185,243 - +0.2 5,185,275 + +2.3 5,185,334 + +0.1 5,185,334 + +0.7 5,185,334 + -0.6 5,185,334 + -0.0 5,185,334 + +0.1 5,185,334 + +1.8 5,185,334 + -0.2 5,185,335 - -1.0 5,185,345 - -0.8 5,185,498 + PS417_23945 0.19 -0.3 5,185,499 - PS417_23945 0.19 +1.1 5,185,524 + PS417_23945 0.23 +0.3 5,185,693 + PS417_23945 0.50 +1.2 5,185,693 + PS417_23945 0.50 +1.7 5,185,693 + PS417_23945 0.50 +1.9 5,185,721 - PS417_23945 0.55 +0.0 5,185,750 - PS417_23945 0.59 +2.3 5,185,750 - PS417_23945 0.59 +0.8 5,185,753 + PS417_23945 0.60 +0.3 5,185,753 + PS417_23945 0.60 -0.0 5,185,753 + PS417_23945 0.60 +0.2 5,185,753 + +2.6 5,185,753 + PS417_23945 0.60 +0.3 5,185,754 - PS417_23945 0.60 -1.1 5,185,754 - PS417_23945 0.60 +0.2 5,185,754 - PS417_23945 0.60 -1.0 5,185,754 - PS417_23945 0.60 +1.0 5,185,872 + PS417_23945 0.79 -0.2 5,185,890 + PS417_23945 0.82 -0.0 5,185,981 - +0.4 5,186,001 + +0.4 5,186,001 + +0.2 5,186,002 - -0.3 5,186,008 - +1.5 5,186,008 - -0.7 5,186,008 - +1.2 5,186,325 - +9.7 5,186,526 + PS417_23950 0.11 +9.8 5,186,526 + PS417_23950 0.11 +10.2 5,186,527 - PS417_23950 0.11 +9.9
Or see this region's nucleotide sequence