Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02360 and PS417_02365 overlap by 32 nucleotides PS417_02365 and PS417_02370 are separated by 193 nucleotides PS417_02370 and PS417_02375 overlap by 10 nucleotides PS417_02375 and PS417_02380 are separated by 97 nucleotides
PS417_02360: PS417_02360 - nitrate reductase, at 540,437 to 541,726
_02360
PS417_02365: PS417_02365 - hypothetical protein, at 541,695 to 542,441
_02365
PS417_02370: PS417_02370 - ADP-ribose pyrophosphatase, at 542,635 to 543,252
_02370
PS417_02375: PS417_02375 - hypothetical protein, at 543,243 to 543,692
_02375
PS417_02380: PS417_02380 - serine/threonine protein phosphatase, at 543,790 to 544,605
_02380
Position (kb) 542
543
544 Strain fitness (log2 ratio) -1
0
1
2
3 at 541.780 kb on + strand, within PS417_02365 at 541.781 kb on - strand, within PS417_02365 at 542.008 kb on + strand, within PS417_02365 at 542.060 kb on - strand, within PS417_02365 at 542.103 kb on + strand, within PS417_02365 at 542.363 kb on - strand, within PS417_02365 at 542.363 kb on - strand, within PS417_02365 at 542.463 kb on - strand at 542.516 kb on - strand at 542.635 kb on - strand at 542.707 kb on + strand, within PS417_02370 at 542.708 kb on - strand, within PS417_02370 at 543.220 kb on - strand at 543.251 kb on - strand at 543.312 kb on + strand, within PS417_02375 at 543.312 kb on + strand, within PS417_02375 at 543.313 kb on - strand, within PS417_02375 at 543.435 kb on + strand, within PS417_02375 at 543.511 kb on - strand, within PS417_02375 at 543.511 kb on - strand, within PS417_02375 at 543.573 kb on + strand, within PS417_02375 at 543.573 kb on + strand, within PS417_02375 at 543.574 kb on - strand, within PS417_02375 at 543.690 kb on + strand at 543.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 541,780 + PS417_02365 0.11 -0.0 541,781 - PS417_02365 0.12 +0.7 542,008 + PS417_02365 0.42 +0.3 542,060 - PS417_02365 0.49 +0.3 542,103 + PS417_02365 0.55 +1.7 542,363 - PS417_02365 0.89 +2.1 542,363 - PS417_02365 0.89 +0.0 542,463 - +0.5 542,516 - +0.7 542,635 - +0.4 542,707 + PS417_02370 0.12 +3.2 542,708 - PS417_02370 0.12 -0.4 543,220 - -0.9 543,251 - +2.8 543,312 + PS417_02375 0.15 +0.0 543,312 + PS417_02375 0.15 -1.0 543,313 - PS417_02375 0.16 -0.2 543,435 + PS417_02375 0.43 +0.4 543,511 - PS417_02375 0.60 +0.1 543,511 - PS417_02375 0.60 +0.2 543,573 + PS417_02375 0.73 +0.6 543,573 + PS417_02375 0.73 -0.6 543,574 - PS417_02375 0.74 -0.3 543,690 + -0.5 543,715 - +0.3
Or see this region's nucleotide sequence