Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22760 and PS417_22765 overlap by 4 nucleotides PS417_22765 and PS417_22770 are separated by 4 nucleotides PS417_22770 and PS417_22775 are separated by 189 nucleotides
PS417_22760: PS417_22760 - hypothetical protein, at 4,933,266 to 4,933,493
_22760
PS417_22765: PS417_22765 - InaA protein, at 4,933,490 to 4,934,209
_22765
PS417_22770: PS417_22770 - SAM-dependent methyltransferase, at 4,934,214 to 4,934,894
_22770
PS417_22775: PS417_22775 - histidine kinase, at 4,935,084 to 4,936,364
_22775
Position (kb) 4934
4935 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 4933.480 kb on - strand at 4933.708 kb on + strand, within PS417_22765 at 4933.719 kb on + strand, within PS417_22765 at 4933.753 kb on + strand, within PS417_22765 at 4933.754 kb on - strand, within PS417_22765 at 4933.943 kb on + strand, within PS417_22765 at 4933.943 kb on + strand, within PS417_22765 at 4933.944 kb on - strand, within PS417_22765 at 4934.029 kb on + strand, within PS417_22765 at 4934.030 kb on - strand, within PS417_22765 at 4934.053 kb on - strand, within PS417_22765 at 4934.177 kb on + strand at 4934.178 kb on - strand at 4934.178 kb on - strand at 4934.192 kb on + strand at 4934.216 kb on - strand at 4934.229 kb on + strand at 4934.229 kb on + strand at 4934.229 kb on + strand at 4934.229 kb on + strand at 4934.230 kb on - strand at 4934.230 kb on - strand at 4934.230 kb on - strand at 4934.230 kb on - strand at 4934.233 kb on + strand at 4934.233 kb on + strand at 4934.233 kb on + strand at 4934.233 kb on + strand at 4934.234 kb on - strand at 4934.234 kb on - strand at 4934.234 kb on - strand at 4934.347 kb on + strand, within PS417_22770 at 4934.546 kb on + strand, within PS417_22770 at 4934.547 kb on - strand, within PS417_22770 at 4934.561 kb on + strand, within PS417_22770 at 4934.834 kb on - strand at 4934.858 kb on - strand at 4934.929 kb on - strand at 4935.020 kb on + strand at 4935.346 kb on + strand, within PS417_22775 at 4935.347 kb on - strand, within PS417_22775 at 4935.347 kb on - strand, within PS417_22775 at 4935.347 kb on - strand, within PS417_22775 at 4935.395 kb on + strand, within PS417_22775 at 4935.401 kb on + strand, within PS417_22775 at 4935.403 kb on + strand, within PS417_22775 at 4935.404 kb on - strand, within PS417_22775 at 4935.433 kb on + strand, within PS417_22775 at 4935.434 kb on - strand, within PS417_22775 at 4935.434 kb on - strand, within PS417_22775 at 4935.434 kb on - strand, within PS417_22775
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 4,933,480 - -0.3 4,933,708 + PS417_22765 0.30 +0.2 4,933,719 + PS417_22765 0.32 +0.5 4,933,753 + PS417_22765 0.37 +0.7 4,933,754 - PS417_22765 0.37 -0.5 4,933,943 + PS417_22765 0.63 +0.1 4,933,943 + PS417_22765 0.63 -0.2 4,933,944 - PS417_22765 0.63 -0.6 4,934,029 + PS417_22765 0.75 +6.0 4,934,030 - PS417_22765 0.75 +1.4 4,934,053 - PS417_22765 0.78 +0.6 4,934,177 + +0.3 4,934,178 - -1.2 4,934,178 - +0.1 4,934,192 + +1.3 4,934,216 - +0.2 4,934,229 + -0.2 4,934,229 + -0.2 4,934,229 + -1.0 4,934,229 + -0.9 4,934,230 - -0.5 4,934,230 - -0.2 4,934,230 - +0.4 4,934,230 - +2.9 4,934,233 + -0.4 4,934,233 + +2.6 4,934,233 + +0.4 4,934,233 + -1.6 4,934,234 - -0.4 4,934,234 - +0.4 4,934,234 - +1.9 4,934,347 + PS417_22770 0.20 -0.9 4,934,546 + PS417_22770 0.49 +1.3 4,934,547 - PS417_22770 0.49 +0.4 4,934,561 + PS417_22770 0.51 +0.6 4,934,834 - +0.9 4,934,858 - -0.7 4,934,929 - +0.7 4,935,020 + +0.5 4,935,346 + PS417_22775 0.20 -0.0 4,935,347 - PS417_22775 0.21 -0.4 4,935,347 - PS417_22775 0.21 -0.7 4,935,347 - PS417_22775 0.21 +0.6 4,935,395 + PS417_22775 0.24 -2.2 4,935,401 + PS417_22775 0.25 -1.4 4,935,403 + PS417_22775 0.25 -0.9 4,935,404 - PS417_22775 0.25 +1.9 4,935,433 + PS417_22775 0.27 -1.1 4,935,434 - PS417_22775 0.27 +0.5 4,935,434 - PS417_22775 0.27 -0.8 4,935,434 - PS417_22775 0.27 +0.6
Or see this region's nucleotide sequence