Strain Fitness in Pseudomonas simiae WCS417 around PS417_21425

Experiment: rhizosphere sample 8; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21420 and PS417_21425 are separated by 1 nucleotidesPS417_21425 and PS417_21430 overlap by 1 nucleotides PS417_21420: PS417_21420 - aminodeoxychorismate lyase, at 4,651,595 to 4,652,740 _21420 PS417_21425: PS417_21425 - 4-amino-4-deoxychorismate lyase, at 4,652,742 to 4,653,557 _21425 PS417_21430: PS417_21430 - 3-oxoacyl-ACP synthase, at 4,653,557 to 4,654,801 _21430 Position (kb) 4652 4653 4654Strain fitness (log2 ratio) -2 -1 0 1 2at 4651.827 kb on + strand, within PS417_21420at 4651.827 kb on + strand, within PS417_21420at 4651.827 kb on + strand, within PS417_21420at 4651.852 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.921 kb on - strand, within PS417_21420at 4651.921 kb on - strand, within PS417_21420at 4651.921 kb on - strand, within PS417_21420at 4651.921 kb on - strand, within PS417_21420at 4651.921 kb on - strand, within PS417_21420at 4651.928 kb on - strand, within PS417_21420at 4651.929 kb on + strand, within PS417_21420at 4651.929 kb on + strand, within PS417_21420at 4651.930 kb on - strand, within PS417_21420at 4651.975 kb on - strand, within PS417_21420at 4651.992 kb on + strand, within PS417_21420at 4651.992 kb on + strand, within PS417_21420at 4651.992 kb on + strand, within PS417_21420at 4651.993 kb on - strand, within PS417_21420at 4651.993 kb on - strand, within PS417_21420at 4651.993 kb on - strand, within PS417_21420at 4652.018 kb on + strand, within PS417_21420at 4652.124 kb on + strand, within PS417_21420at 4652.136 kb on + strand, within PS417_21420at 4652.177 kb on + strand, within PS417_21420at 4652.178 kb on - strand, within PS417_21420at 4652.244 kb on + strand, within PS417_21420at 4652.244 kb on + strand, within PS417_21420at 4652.245 kb on - strand, within PS417_21420at 4652.245 kb on - strand, within PS417_21420at 4652.245 kb on - strandat 4652.245 kb on - strand, within PS417_21420at 4652.409 kb on + strand, within PS417_21420at 4652.410 kb on - strand, within PS417_21420at 4652.435 kb on + strand, within PS417_21420at 4652.478 kb on + strand, within PS417_21420at 4652.524 kb on - strand, within PS417_21420at 4652.720 kb on + strandat 4652.720 kb on + strandat 4652.720 kb on + strandat 4652.720 kb on + strandat 4652.720 kb on + strandat 4652.720 kb on + strandat 4652.721 kb on - strandat 4652.721 kb on - strandat 4652.721 kb on - strandat 4653.015 kb on + strand, within PS417_21425at 4653.228 kb on - strand, within PS417_21425at 4653.493 kb on + strandat 4653.903 kb on + strand, within PS417_21430at 4653.904 kb on - strand, within PS417_21430at 4654.310 kb on - strand, within PS417_21430at 4654.330 kb on - strand, within PS417_21430at 4654.379 kb on - strand, within PS417_21430

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB
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4,651,827 + PS417_21420 0.20 -0.9
4,651,827 + PS417_21420 0.20 -0.7
4,651,827 + PS417_21420 0.20 -1.6
4,651,852 + PS417_21420 0.22 -1.1
4,651,920 + PS417_21420 0.28 +2.6
4,651,920 + PS417_21420 0.28 -0.8
4,651,920 + PS417_21420 0.28 -1.9
4,651,920 + PS417_21420 0.28 -2.1
4,651,920 + PS417_21420 0.28 -1.1
4,651,920 + PS417_21420 0.28 -0.1
4,651,920 + PS417_21420 0.28 -1.6
4,651,920 + PS417_21420 0.28 -1.1
4,651,920 + PS417_21420 0.28 -0.8
4,651,920 + PS417_21420 0.28 -1.7
4,651,920 + PS417_21420 0.28 -1.8
4,651,921 - PS417_21420 0.28 -0.9
4,651,921 - PS417_21420 0.28 -1.9
4,651,921 - PS417_21420 0.28 +0.5
4,651,921 - PS417_21420 0.28 +1.5
4,651,921 - PS417_21420 0.28 -1.5
4,651,928 - PS417_21420 0.29 -2.3
4,651,929 + PS417_21420 0.29 +0.3
4,651,929 + PS417_21420 0.29 -1.1
4,651,930 - PS417_21420 0.29 +0.4
4,651,975 - PS417_21420 0.33 -1.5
4,651,992 + PS417_21420 0.35 -0.4
4,651,992 + PS417_21420 0.35 -2.6
4,651,992 + PS417_21420 0.35 -2.2
4,651,993 - PS417_21420 0.35 -0.9
4,651,993 - PS417_21420 0.35 -2.1
4,651,993 - PS417_21420 0.35 -1.1
4,652,018 + PS417_21420 0.37 -1.8
4,652,124 + PS417_21420 0.46 -1.8
4,652,136 + PS417_21420 0.47 -1.5
4,652,177 + PS417_21420 0.51 -1.0
4,652,178 - PS417_21420 0.51 -0.1
4,652,244 + PS417_21420 0.57 -1.2
4,652,244 + PS417_21420 0.57 +0.2
4,652,245 - PS417_21420 0.57 -1.3
4,652,245 - PS417_21420 0.57 -1.9
4,652,245 - +1.5
4,652,245 - PS417_21420 0.57 -0.6
4,652,409 + PS417_21420 0.71 -0.0
4,652,410 - PS417_21420 0.71 -1.4
4,652,435 + PS417_21420 0.73 -1.4
4,652,478 + PS417_21420 0.77 -1.3
4,652,524 - PS417_21420 0.81 -1.1
4,652,720 + -0.8
4,652,720 + -1.1
4,652,720 + -0.9
4,652,720 + -0.8
4,652,720 + -0.9
4,652,720 + -1.4
4,652,721 - -1.4
4,652,721 - +1.2
4,652,721 - -0.4
4,653,015 + PS417_21425 0.33 -0.7
4,653,228 - PS417_21425 0.60 -1.4
4,653,493 + +1.3
4,653,903 + PS417_21430 0.28 -0.9
4,653,904 - PS417_21430 0.28 -0.7
4,654,310 - PS417_21430 0.60 +0.1
4,654,330 - PS417_21430 0.62 -0.6
4,654,379 - PS417_21430 0.66 -0.4

Or see this region's nucleotide sequence