Experiment: sarcosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0481 and Atu0482 are separated by 26 nucleotides Atu0482 and Atu0483 are separated by 61 nucleotides Atu0483 and Atu0484 are separated by 112 nucleotides
Atu0481: Atu0481 - exopolysaccharide production protein, at 470,111 to 471,406
Atu0481
Atu0482: Atu0482 - polysaccharide deacetylase, at 471,433 to 472,185
Atu0482
Atu0483: Atu0483 - bacteriophage repressor protein C1, at 472,247 to 472,897
Atu0483
Atu0484: Atu0484 - two component response regulator, at 473,010 to 473,660
Atu0484
Position (kb) 471
472
473 Strain fitness (log2 ratio) -1
0
1 at 470.467 kb on - strand, within Atu0481 at 470.562 kb on + strand, within Atu0481 at 470.592 kb on + strand, within Atu0481 at 470.597 kb on + strand, within Atu0481 at 470.612 kb on - strand, within Atu0481 at 470.703 kb on + strand, within Atu0481 at 470.703 kb on + strand, within Atu0481 at 470.711 kb on - strand, within Atu0481 at 470.711 kb on - strand, within Atu0481 at 470.729 kb on + strand, within Atu0481 at 470.737 kb on - strand, within Atu0481 at 470.825 kb on - strand, within Atu0481 at 470.827 kb on + strand, within Atu0481 at 470.830 kb on - strand, within Atu0481 at 470.835 kb on - strand, within Atu0481 at 470.844 kb on + strand, within Atu0481 at 470.879 kb on + strand, within Atu0481 at 470.879 kb on + strand, within Atu0481 at 470.879 kb on + strand, within Atu0481 at 470.879 kb on + strand, within Atu0481 at 470.888 kb on + strand, within Atu0481 at 471.001 kb on - strand, within Atu0481 at 471.017 kb on - strand, within Atu0481 at 471.229 kb on - strand, within Atu0481 at 471.253 kb on - strand, within Atu0481 at 471.401 kb on - strand at 471.407 kb on + strand at 471.417 kb on + strand at 471.623 kb on - strand, within Atu0482 at 471.704 kb on + strand, within Atu0482 at 471.725 kb on + strand, within Atu0482 at 471.750 kb on - strand, within Atu0482 at 471.750 kb on - strand, within Atu0482 at 471.933 kb on - strand, within Atu0482 at 471.943 kb on - strand, within Atu0482 at 471.943 kb on - strand, within Atu0482 at 471.961 kb on + strand, within Atu0482 at 471.969 kb on - strand, within Atu0482 at 472.052 kb on + strand, within Atu0482 at 472.143 kb on + strand at 472.254 kb on - strand at 472.254 kb on - strand at 473.062 kb on - strand at 473.074 kb on + strand at 473.075 kb on + strand, within Atu0484 at 473.080 kb on + strand, within Atu0484 at 473.128 kb on + strand, within Atu0484
Per-strain Table
Position Strand Gene LocusTag Fraction sarcosine (C) remove 470,467 - Atu0481 0.27 +0.7 470,562 + Atu0481 0.35 +0.0 470,592 + Atu0481 0.37 -0.1 470,597 + Atu0481 0.38 -0.1 470,612 - Atu0481 0.39 -1.3 470,703 + Atu0481 0.46 +0.6 470,703 + Atu0481 0.46 -0.6 470,711 - Atu0481 0.46 -1.2 470,711 - Atu0481 0.46 -0.7 470,729 + Atu0481 0.48 -0.2 470,737 - Atu0481 0.48 +0.5 470,825 - Atu0481 0.55 +0.4 470,827 + Atu0481 0.55 -0.2 470,830 - Atu0481 0.55 -0.4 470,835 - Atu0481 0.56 +0.0 470,844 + Atu0481 0.57 +1.0 470,879 + Atu0481 0.59 -0.2 470,879 + Atu0481 0.59 -0.9 470,879 + Atu0481 0.59 +0.3 470,879 + Atu0481 0.59 -0.2 470,888 + Atu0481 0.60 -0.3 471,001 - Atu0481 0.69 -0.2 471,017 - Atu0481 0.70 -0.9 471,229 - Atu0481 0.86 -0.7 471,253 - Atu0481 0.88 -1.6 471,401 - -0.2 471,407 + +0.6 471,417 + +0.6 471,623 - Atu0482 0.25 +0.1 471,704 + Atu0482 0.36 -1.0 471,725 + Atu0482 0.39 +0.6 471,750 - Atu0482 0.42 -0.6 471,750 - Atu0482 0.42 +1.7 471,933 - Atu0482 0.66 -0.6 471,943 - Atu0482 0.68 -0.9 471,943 - Atu0482 0.68 +0.7 471,961 + Atu0482 0.70 +0.3 471,969 - Atu0482 0.71 -0.0 472,052 + Atu0482 0.82 +0.2 472,143 + +1.0 472,254 - -0.3 472,254 - -0.2 473,062 - -0.7 473,074 + +0.3 473,075 + Atu0484 0.10 -0.3 473,080 + Atu0484 0.11 +0.7 473,128 + Atu0484 0.18 -1.3
Or see this region's nucleotide sequence