Experiment: KB with D-Salicin 240 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4642 and Psyr_RNA75 are separated by 15 nucleotides Psyr_RNA75 and Psyr_4643 are separated by 126 nucleotides
Psyr_4642: Psyr_4642 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 5,504,338 to 5,506,824
_4642
Psyr_RNA75: Psyr_RNA75 - tRNA-Met, at 5,506,840 to 5,506,916
_RNA75
Psyr_4643: Psyr_4643 - conjugal transfer protein, at 5,507,043 to 5,508,014
_4643
Position (kb) 5506
5507 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5505.856 kb on + strand, within Psyr_4642 at 5505.856 kb on + strand, within Psyr_4642 at 5505.856 kb on + strand, within Psyr_4642 at 5505.856 kb on + strand, within Psyr_4642 at 5505.857 kb on - strand, within Psyr_4642 at 5505.857 kb on - strand, within Psyr_4642 at 5505.857 kb on - strand, within Psyr_4642 at 5505.857 kb on - strand, within Psyr_4642 at 5505.857 kb on - strand, within Psyr_4642 at 5505.857 kb on - strand, within Psyr_4642 at 5505.857 kb on - strand, within Psyr_4642 at 5505.857 kb on - strand, within Psyr_4642 at 5505.857 kb on - strand, within Psyr_4642 at 5505.943 kb on + strand, within Psyr_4642 at 5505.944 kb on - strand, within Psyr_4642 at 5505.944 kb on - strand, within Psyr_4642 at 5505.944 kb on - strand, within Psyr_4642 at 5505.944 kb on - strand, within Psyr_4642 at 5505.982 kb on + strand, within Psyr_4642 at 5505.982 kb on + strand, within Psyr_4642 at 5505.982 kb on + strand, within Psyr_4642 at 5505.982 kb on + strand, within Psyr_4642 at 5505.982 kb on + strand, within Psyr_4642 at 5505.983 kb on - strand, within Psyr_4642 at 5505.983 kb on - strand, within Psyr_4642 at 5505.983 kb on - strand, within Psyr_4642 at 5505.984 kb on + strand, within Psyr_4642 at 5505.984 kb on + strand, within Psyr_4642 at 5505.984 kb on + strand, within Psyr_4642 at 5505.984 kb on + strand, within Psyr_4642 at 5505.985 kb on - strand, within Psyr_4642 at 5505.985 kb on - strand, within Psyr_4642 at 5506.075 kb on + strand, within Psyr_4642 at 5506.254 kb on + strand, within Psyr_4642 at 5506.254 kb on + strand, within Psyr_4642 at 5506.254 kb on + strand, within Psyr_4642 at 5506.254 kb on + strand, within Psyr_4642 at 5506.254 kb on + strand, within Psyr_4642 at 5506.254 kb on + strand, within Psyr_4642 at 5506.254 kb on + strand, within Psyr_4642 at 5506.255 kb on - strand, within Psyr_4642 at 5506.255 kb on - strand, within Psyr_4642 at 5506.255 kb on - strand, within Psyr_4642 at 5506.255 kb on - strand, within Psyr_4642 at 5506.255 kb on - strand, within Psyr_4642 at 5506.255 kb on - strand, within Psyr_4642 at 5506.255 kb on - strand, within Psyr_4642 at 5506.255 kb on - strand, within Psyr_4642 at 5506.256 kb on + strand, within Psyr_4642 at 5506.257 kb on - strand, within Psyr_4642 at 5506.257 kb on - strand, within Psyr_4642 at 5506.501 kb on + strand, within Psyr_4642 at 5506.502 kb on - strand, within Psyr_4642 at 5506.516 kb on + strand, within Psyr_4642 at 5506.517 kb on - strand, within Psyr_4642 at 5506.517 kb on - strand, within Psyr_4642 at 5506.720 kb on + strand at 5506.822 kb on + strand at 5506.822 kb on + strand at 5506.834 kb on + strand at 5506.834 kb on + strand at 5506.973 kb on - strand at 5506.973 kb on - strand at 5506.990 kb on - strand at 5507.004 kb on + strand at 5507.005 kb on - strand at 5507.005 kb on - strand at 5507.048 kb on + strand at 5507.105 kb on - strand at 5507.105 kb on - strand at 5507.110 kb on + strand at 5507.212 kb on + strand, within Psyr_4643 at 5507.213 kb on - strand, within Psyr_4643 at 5507.245 kb on + strand, within Psyr_4643 at 5507.246 kb on - strand, within Psyr_4643 at 5507.256 kb on + strand, within Psyr_4643 at 5507.257 kb on - strand, within Psyr_4643 at 5507.257 kb on - strand, within Psyr_4643 at 5507.257 kb on - strand, within Psyr_4643 at 5507.257 kb on - strand, within Psyr_4643 at 5507.260 kb on - strand, within Psyr_4643 at 5507.269 kb on + strand, within Psyr_4643 at 5507.269 kb on + strand, within Psyr_4643 at 5507.270 kb on - strand, within Psyr_4643 at 5507.270 kb on - strand, within Psyr_4643 at 5507.270 kb on - strand, within Psyr_4643 at 5507.318 kb on - strand, within Psyr_4643 at 5507.340 kb on + strand, within Psyr_4643 at 5507.341 kb on - strand, within Psyr_4643 at 5507.341 kb on - strand, within Psyr_4643 at 5507.344 kb on - strand, within Psyr_4643 at 5507.344 kb on - strand, within Psyr_4643 at 5507.383 kb on + strand, within Psyr_4643 at 5507.384 kb on - strand, within Psyr_4643 at 5507.384 kb on - strand, within Psyr_4643 at 5507.384 kb on - strand, within Psyr_4643 at 5507.389 kb on + strand, within Psyr_4643 at 5507.390 kb on - strand, within Psyr_4643 at 5507.410 kb on + strand, within Psyr_4643 at 5507.455 kb on + strand, within Psyr_4643 at 5507.455 kb on + strand, within Psyr_4643 at 5507.456 kb on - strand, within Psyr_4643 at 5507.537 kb on + strand, within Psyr_4643 at 5507.542 kb on + strand, within Psyr_4643 at 5507.543 kb on - strand, within Psyr_4643 at 5507.584 kb on + strand, within Psyr_4643 at 5507.584 kb on + strand, within Psyr_4643 at 5507.585 kb on - strand, within Psyr_4643 at 5507.585 kb on - strand, within Psyr_4643 at 5507.585 kb on - strand, within Psyr_4643 at 5507.585 kb on - strand, within Psyr_4643 at 5507.618 kb on + strand, within Psyr_4643 at 5507.618 kb on + strand, within Psyr_4643 at 5507.619 kb on - strand, within Psyr_4643 at 5507.664 kb on - strand, within Psyr_4643 at 5507.664 kb on - strand, within Psyr_4643 at 5507.674 kb on - strand, within Psyr_4643 at 5507.760 kb on + strand, within Psyr_4643 at 5507.839 kb on + strand, within Psyr_4643 at 5507.839 kb on + strand, within Psyr_4643 at 5507.839 kb on + strand, within Psyr_4643 at 5507.840 kb on - strand, within Psyr_4643 at 5507.840 kb on - strand, within Psyr_4643 at 5507.871 kb on - strand, within Psyr_4643 at 5507.906 kb on + strand, within Psyr_4643 at 5507.906 kb on + strand, within Psyr_4643 at 5507.907 kb on - strand, within Psyr_4643 at 5507.909 kb on + strand, within Psyr_4643 at 5507.910 kb on - strand, within Psyr_4643
Per-strain Table
Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml remove 5,505,856 + Psyr_4642 0.61 +3.2 5,505,856 + Psyr_4642 0.61 +1.3 5,505,856 + Psyr_4642 0.61 +1.1 5,505,856 + Psyr_4642 0.61 +0.5 5,505,857 - Psyr_4642 0.61 -0.6 5,505,857 - Psyr_4642 0.61 +1.8 5,505,857 - Psyr_4642 0.61 -0.6 5,505,857 - Psyr_4642 0.61 +0.4 5,505,857 - Psyr_4642 0.61 +0.1 5,505,857 - Psyr_4642 0.61 -0.0 5,505,857 - Psyr_4642 0.61 -0.7 5,505,857 - Psyr_4642 0.61 -0.3 5,505,857 - Psyr_4642 0.61 +0.5 5,505,943 + Psyr_4642 0.65 -0.6 5,505,944 - Psyr_4642 0.65 +1.4 5,505,944 - Psyr_4642 0.65 -0.1 5,505,944 - Psyr_4642 0.65 -2.1 5,505,944 - Psyr_4642 0.65 +0.4 5,505,982 + Psyr_4642 0.66 +0.2 5,505,982 + Psyr_4642 0.66 +0.0 5,505,982 + Psyr_4642 0.66 -0.1 5,505,982 + Psyr_4642 0.66 -0.5 5,505,982 + Psyr_4642 0.66 +0.1 5,505,983 - Psyr_4642 0.66 -0.7 5,505,983 - Psyr_4642 0.66 -1.2 5,505,983 - Psyr_4642 0.66 +0.0 5,505,984 + Psyr_4642 0.66 -0.4 5,505,984 + Psyr_4642 0.66 -0.3 5,505,984 + Psyr_4642 0.66 -0.6 5,505,984 + Psyr_4642 0.66 -0.4 5,505,985 - Psyr_4642 0.66 +0.2 5,505,985 - Psyr_4642 0.66 +1.2 5,506,075 + Psyr_4642 0.70 +0.8 5,506,254 + Psyr_4642 0.77 +0.6 5,506,254 + Psyr_4642 0.77 +1.5 5,506,254 + Psyr_4642 0.77 -0.1 5,506,254 + Psyr_4642 0.77 +1.9 5,506,254 + Psyr_4642 0.77 +0.4 5,506,254 + Psyr_4642 0.77 -0.3 5,506,254 + Psyr_4642 0.77 -0.5 5,506,255 - Psyr_4642 0.77 -0.6 5,506,255 - Psyr_4642 0.77 -0.1 5,506,255 - Psyr_4642 0.77 +0.0 5,506,255 - Psyr_4642 0.77 +0.2 5,506,255 - Psyr_4642 0.77 -1.3 5,506,255 - Psyr_4642 0.77 -0.4 5,506,255 - Psyr_4642 0.77 +0.3 5,506,255 - Psyr_4642 0.77 -0.7 5,506,256 + Psyr_4642 0.77 +0.6 5,506,257 - Psyr_4642 0.77 -1.1 5,506,257 - Psyr_4642 0.77 -0.4 5,506,501 + Psyr_4642 0.87 -1.4 5,506,502 - Psyr_4642 0.87 +0.5 5,506,516 + Psyr_4642 0.88 +0.0 5,506,517 - Psyr_4642 0.88 -0.1 5,506,517 - Psyr_4642 0.88 -0.2 5,506,720 + -1.0 5,506,822 + +1.2 5,506,822 + -0.3 5,506,834 + +1.1 5,506,834 + +3.8 5,506,973 - -0.3 5,506,973 - +0.7 5,506,990 - -1.2 5,507,004 + -0.5 5,507,005 - +1.9 5,507,005 - -0.5 5,507,048 + +0.5 5,507,105 - -0.3 5,507,105 - -2.2 5,507,110 + -0.8 5,507,212 + Psyr_4643 0.17 -1.1 5,507,213 - Psyr_4643 0.17 +0.9 5,507,245 + Psyr_4643 0.21 +1.1 5,507,246 - Psyr_4643 0.21 +0.7 5,507,256 + Psyr_4643 0.22 +0.9 5,507,257 - Psyr_4643 0.22 -1.2 5,507,257 - Psyr_4643 0.22 +1.3 5,507,257 - Psyr_4643 0.22 +0.2 5,507,257 - Psyr_4643 0.22 +0.5 5,507,260 - Psyr_4643 0.22 +2.2 5,507,269 + Psyr_4643 0.23 -0.1 5,507,269 + Psyr_4643 0.23 +0.4 5,507,270 - Psyr_4643 0.23 +0.7 5,507,270 - Psyr_4643 0.23 +0.9 5,507,270 - Psyr_4643 0.23 -0.3 5,507,318 - Psyr_4643 0.28 -1.0 5,507,340 + Psyr_4643 0.31 -0.7 5,507,341 - Psyr_4643 0.31 +0.7 5,507,341 - Psyr_4643 0.31 +0.4 5,507,344 - Psyr_4643 0.31 +0.5 5,507,344 - Psyr_4643 0.31 -0.4 5,507,383 + Psyr_4643 0.35 +0.7 5,507,384 - Psyr_4643 0.35 +0.7 5,507,384 - Psyr_4643 0.35 +0.1 5,507,384 - Psyr_4643 0.35 +0.5 5,507,389 + Psyr_4643 0.36 +1.0 5,507,390 - Psyr_4643 0.36 -0.0 5,507,410 + Psyr_4643 0.38 -1.1 5,507,455 + Psyr_4643 0.42 -0.5 5,507,455 + Psyr_4643 0.42 +0.7 5,507,456 - Psyr_4643 0.42 -0.6 5,507,537 + Psyr_4643 0.51 +1.5 5,507,542 + Psyr_4643 0.51 +0.0 5,507,543 - Psyr_4643 0.51 -2.4 5,507,584 + Psyr_4643 0.56 +0.3 5,507,584 + Psyr_4643 0.56 +0.4 5,507,585 - Psyr_4643 0.56 +0.1 5,507,585 - Psyr_4643 0.56 +1.2 5,507,585 - Psyr_4643 0.56 -1.1 5,507,585 - Psyr_4643 0.56 +0.4 5,507,618 + Psyr_4643 0.59 -1.0 5,507,618 + Psyr_4643 0.59 -2.2 5,507,619 - Psyr_4643 0.59 +0.8 5,507,664 - Psyr_4643 0.64 +0.1 5,507,664 - Psyr_4643 0.64 -2.4 5,507,674 - Psyr_4643 0.65 -1.5 5,507,760 + Psyr_4643 0.74 -2.0 5,507,839 + Psyr_4643 0.82 -0.2 5,507,839 + Psyr_4643 0.82 -0.9 5,507,839 + Psyr_4643 0.82 +0.2 5,507,840 - Psyr_4643 0.82 -1.2 5,507,840 - Psyr_4643 0.82 -0.2 5,507,871 - Psyr_4643 0.85 -0.1 5,507,906 + Psyr_4643 0.89 +0.7 5,507,906 + Psyr_4643 0.89 +1.0 5,507,907 - Psyr_4643 0.89 +0.9 5,507,909 + Psyr_4643 0.89 -0.6 5,507,910 - Psyr_4643 0.89 +0.3
Or see this region's nucleotide sequence