Experiment: KB with D-Salicin 240 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3723 and Psyr_3724 are separated by 211 nucleotides Psyr_3724 and Psyr_3725 overlap by 4 nucleotides
Psyr_3723: Psyr_3723 - CDS, at 4,432,076 to 4,432,312
_3723
Psyr_3724: Psyr_3724 - conserved hypothetical protein, at 4,432,524 to 4,433,780
_3724
Psyr_3725: Psyr_3725 - ATPase, at 4,433,777 to 4,435,330
_3725
Position (kb) 4432
4433
4434 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4431.526 kb on + strand at 4431.526 kb on + strand at 4431.527 kb on - strand at 4431.527 kb on - strand at 4431.527 kb on - strand at 4431.640 kb on + strand at 4431.651 kb on + strand at 4431.738 kb on + strand at 4431.750 kb on - strand at 4431.752 kb on + strand at 4431.765 kb on + strand at 4431.765 kb on + strand at 4431.766 kb on - strand at 4431.785 kb on + strand at 4431.786 kb on - strand at 4431.786 kb on - strand at 4431.805 kb on - strand at 4431.871 kb on + strand at 4431.871 kb on + strand at 4431.871 kb on + strand at 4431.871 kb on + strand at 4431.871 kb on + strand at 4431.871 kb on + strand at 4431.872 kb on - strand at 4431.872 kb on - strand at 4431.872 kb on - strand at 4431.872 kb on - strand at 4431.872 kb on - strand at 4431.872 kb on - strand at 4431.873 kb on + strand at 4431.873 kb on + strand at 4431.873 kb on + strand at 4431.873 kb on + strand at 4431.873 kb on + strand at 4431.874 kb on - strand at 4432.002 kb on + strand at 4432.023 kb on - strand at 4432.046 kb on + strand at 4432.047 kb on - strand at 4432.169 kb on + strand, within Psyr_3723 at 4432.169 kb on + strand, within Psyr_3723 at 4432.314 kb on + strand at 4432.360 kb on - strand at 4432.360 kb on - strand at 4432.476 kb on - strand at 4432.504 kb on + strand at 4432.505 kb on - strand at 4432.522 kb on + strand at 4432.522 kb on + strand at 4432.526 kb on - strand at 4432.675 kb on - strand, within Psyr_3724 at 4432.678 kb on + strand, within Psyr_3724 at 4432.678 kb on + strand, within Psyr_3724 at 4432.678 kb on + strand, within Psyr_3724 at 4432.678 kb on + strand, within Psyr_3724 at 4432.678 kb on + strand, within Psyr_3724 at 4432.678 kb on + strand, within Psyr_3724 at 4432.679 kb on - strand, within Psyr_3724 at 4432.679 kb on - strand, within Psyr_3724 at 4432.679 kb on - strand, within Psyr_3724 at 4432.679 kb on - strand, within Psyr_3724 at 4432.730 kb on - strand, within Psyr_3724 at 4432.802 kb on + strand, within Psyr_3724 at 4432.803 kb on - strand, within Psyr_3724 at 4432.851 kb on - strand, within Psyr_3724 at 4432.851 kb on - strand, within Psyr_3724 at 4432.851 kb on - strand, within Psyr_3724 at 4432.851 kb on - strand, within Psyr_3724 at 4432.858 kb on + strand, within Psyr_3724 at 4432.859 kb on - strand, within Psyr_3724 at 4432.859 kb on - strand, within Psyr_3724 at 4432.881 kb on + strand, within Psyr_3724 at 4432.881 kb on + strand, within Psyr_3724 at 4432.927 kb on + strand, within Psyr_3724 at 4432.927 kb on + strand, within Psyr_3724 at 4432.959 kb on + strand, within Psyr_3724 at 4432.959 kb on + strand, within Psyr_3724 at 4432.959 kb on + strand, within Psyr_3724 at 4432.960 kb on - strand, within Psyr_3724 at 4433.153 kb on + strand, within Psyr_3724 at 4433.153 kb on + strand, within Psyr_3724 at 4433.175 kb on - strand, within Psyr_3724 at 4433.232 kb on + strand, within Psyr_3724 at 4433.232 kb on + strand, within Psyr_3724 at 4433.232 kb on + strand, within Psyr_3724 at 4433.232 kb on + strand, within Psyr_3724 at 4433.232 kb on + strand, within Psyr_3724 at 4433.233 kb on - strand, within Psyr_3724 at 4433.314 kb on + strand, within Psyr_3724 at 4433.314 kb on + strand, within Psyr_3724 at 4433.315 kb on - strand, within Psyr_3724 at 4433.338 kb on - strand, within Psyr_3724 at 4433.341 kb on + strand, within Psyr_3724 at 4433.341 kb on + strand, within Psyr_3724 at 4433.454 kb on - strand, within Psyr_3724 at 4433.464 kb on - strand, within Psyr_3724 at 4433.464 kb on - strand, within Psyr_3724 at 4433.464 kb on - strand, within Psyr_3724 at 4433.469 kb on + strand, within Psyr_3724 at 4433.469 kb on + strand, within Psyr_3724 at 4433.469 kb on + strand, within Psyr_3724 at 4433.469 kb on + strand, within Psyr_3724 at 4433.590 kb on + strand, within Psyr_3724 at 4433.590 kb on + strand, within Psyr_3724 at 4433.590 kb on + strand, within Psyr_3724 at 4433.590 kb on + strand, within Psyr_3724 at 4433.590 kb on + strand, within Psyr_3724 at 4433.590 kb on + strand, within Psyr_3724 at 4433.590 kb on + strand, within Psyr_3724 at 4433.591 kb on - strand, within Psyr_3724 at 4433.591 kb on - strand, within Psyr_3724 at 4433.591 kb on - strand, within Psyr_3724 at 4433.591 kb on - strand, within Psyr_3724 at 4433.591 kb on - strand, within Psyr_3724 at 4433.591 kb on - strand, within Psyr_3724 at 4433.591 kb on - strand, within Psyr_3724 at 4433.591 kb on - strand, within Psyr_3724 at 4433.591 kb on - strand, within Psyr_3724 at 4433.591 kb on - strand, within Psyr_3724 at 4433.594 kb on + strand, within Psyr_3724 at 4433.604 kb on - strand, within Psyr_3724 at 4433.652 kb on - strand, within Psyr_3724 at 4433.707 kb on - strand at 4433.707 kb on - strand at 4433.707 kb on - strand at 4433.752 kb on + strand at 4433.752 kb on + strand at 4433.753 kb on - strand at 4433.753 kb on - strand at 4433.857 kb on + strand at 4433.857 kb on + strand at 4433.857 kb on + strand at 4433.857 kb on + strand at 4433.858 kb on - strand at 4433.858 kb on - strand at 4433.858 kb on - strand at 4433.858 kb on - strand at 4433.858 kb on - strand at 4433.858 kb on - strand at 4433.860 kb on + strand at 4433.860 kb on + strand at 4433.860 kb on + strand at 4433.860 kb on + strand at 4433.860 kb on + strand at 4433.860 kb on + strand at 4433.860 kb on + strand at 4433.860 kb on + strand at 4433.860 kb on + strand at 4433.861 kb on - strand at 4433.861 kb on - strand at 4433.861 kb on - strand at 4433.861 kb on - strand at 4433.861 kb on - strand at 4433.861 kb on - strand at 4433.864 kb on + strand at 4433.931 kb on + strand at 4433.931 kb on + strand at 4433.942 kb on - strand, within Psyr_3725 at 4433.963 kb on + strand, within Psyr_3725 at 4433.963 kb on + strand, within Psyr_3725 at 4433.963 kb on + strand, within Psyr_3725 at 4433.964 kb on - strand, within Psyr_3725 at 4433.964 kb on - strand, within Psyr_3725 at 4433.964 kb on - strand, within Psyr_3725 at 4433.969 kb on + strand, within Psyr_3725 at 4433.969 kb on + strand, within Psyr_3725 at 4433.970 kb on - strand, within Psyr_3725 at 4433.970 kb on - strand, within Psyr_3725 at 4434.042 kb on + strand, within Psyr_3725 at 4434.043 kb on - strand, within Psyr_3725 at 4434.043 kb on - strand, within Psyr_3725 at 4434.043 kb on - strand, within Psyr_3725 at 4434.160 kb on + strand, within Psyr_3725 at 4434.225 kb on + strand, within Psyr_3725 at 4434.225 kb on + strand, within Psyr_3725 at 4434.226 kb on - strand, within Psyr_3725 at 4434.237 kb on - strand, within Psyr_3725 at 4434.237 kb on - strand, within Psyr_3725 at 4434.262 kb on + strand, within Psyr_3725 at 4434.262 kb on + strand, within Psyr_3725 at 4434.263 kb on - strand, within Psyr_3725 at 4434.263 kb on - strand, within Psyr_3725 at 4434.305 kb on - strand, within Psyr_3725 at 4434.309 kb on + strand, within Psyr_3725 at 4434.309 kb on + strand, within Psyr_3725 at 4434.310 kb on - strand, within Psyr_3725 at 4434.310 kb on - strand, within Psyr_3725 at 4434.310 kb on - strand, within Psyr_3725 at 4434.310 kb on - strand, within Psyr_3725 at 4434.352 kb on + strand, within Psyr_3725 at 4434.352 kb on + strand, within Psyr_3725 at 4434.352 kb on + strand, within Psyr_3725 at 4434.353 kb on - strand, within Psyr_3725 at 4434.353 kb on - strand, within Psyr_3725 at 4434.404 kb on + strand, within Psyr_3725 at 4434.404 kb on + strand, within Psyr_3725 at 4434.405 kb on - strand, within Psyr_3725 at 4434.405 kb on - strand, within Psyr_3725 at 4434.405 kb on - strand, within Psyr_3725 at 4434.405 kb on - strand, within Psyr_3725 at 4434.566 kb on - strand, within Psyr_3725 at 4434.617 kb on - strand, within Psyr_3725 at 4434.763 kb on + strand, within Psyr_3725
Per-strain Table
Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml remove 4,431,526 + -0.1 4,431,526 + +0.2 4,431,527 - +0.3 4,431,527 - -0.3 4,431,527 - +0.1 4,431,640 + +1.1 4,431,651 + -0.2 4,431,738 + -0.0 4,431,750 - -1.1 4,431,752 + +1.3 4,431,765 + +0.2 4,431,765 + +1.3 4,431,766 - +0.2 4,431,785 + +0.6 4,431,786 - +1.9 4,431,786 - -0.1 4,431,805 - +0.0 4,431,871 + -0.7 4,431,871 + +0.3 4,431,871 + +1.3 4,431,871 + +0.1 4,431,871 + +0.1 4,431,871 + -0.5 4,431,872 - -1.0 4,431,872 - -1.0 4,431,872 - +0.1 4,431,872 - -1.6 4,431,872 - -0.3 4,431,872 - +0.7 4,431,873 + +1.7 4,431,873 + +0.4 4,431,873 + -0.1 4,431,873 + -0.5 4,431,873 + -0.4 4,431,874 - +0.3 4,432,002 + -0.4 4,432,023 - +1.0 4,432,046 + -1.4 4,432,047 - -0.4 4,432,169 + Psyr_3723 0.39 -0.2 4,432,169 + Psyr_3723 0.39 -2.3 4,432,314 + +3.5 4,432,360 - -2.1 4,432,360 - -0.8 4,432,476 - -0.9 4,432,504 + -1.6 4,432,505 - -2.2 4,432,522 + -1.3 4,432,522 + -1.3 4,432,526 - -1.2 4,432,675 - Psyr_3724 0.12 -0.9 4,432,678 + Psyr_3724 0.12 +0.4 4,432,678 + Psyr_3724 0.12 -0.6 4,432,678 + Psyr_3724 0.12 +1.2 4,432,678 + Psyr_3724 0.12 -1.6 4,432,678 + Psyr_3724 0.12 -1.4 4,432,678 + Psyr_3724 0.12 -0.2 4,432,679 - Psyr_3724 0.12 -0.8 4,432,679 - Psyr_3724 0.12 +2.1 4,432,679 - Psyr_3724 0.12 +2.0 4,432,679 - Psyr_3724 0.12 -1.3 4,432,730 - Psyr_3724 0.16 -1.4 4,432,802 + Psyr_3724 0.22 +0.6 4,432,803 - Psyr_3724 0.22 -0.6 4,432,851 - Psyr_3724 0.26 +0.1 4,432,851 - Psyr_3724 0.26 +0.7 4,432,851 - Psyr_3724 0.26 +0.3 4,432,851 - Psyr_3724 0.26 -0.9 4,432,858 + Psyr_3724 0.27 -0.0 4,432,859 - Psyr_3724 0.27 +1.3 4,432,859 - Psyr_3724 0.27 -3.4 4,432,881 + Psyr_3724 0.28 +0.7 4,432,881 + Psyr_3724 0.28 +0.7 4,432,927 + Psyr_3724 0.32 +0.4 4,432,927 + Psyr_3724 0.32 +0.4 4,432,959 + Psyr_3724 0.35 +1.0 4,432,959 + Psyr_3724 0.35 +0.3 4,432,959 + Psyr_3724 0.35 +0.0 4,432,960 - Psyr_3724 0.35 -0.5 4,433,153 + Psyr_3724 0.50 -1.5 4,433,153 + Psyr_3724 0.50 +0.7 4,433,175 - Psyr_3724 0.52 -1.6 4,433,232 + Psyr_3724 0.56 -0.1 4,433,232 + Psyr_3724 0.56 -0.1 4,433,232 + Psyr_3724 0.56 +0.6 4,433,232 + Psyr_3724 0.56 +0.1 4,433,232 + Psyr_3724 0.56 +0.0 4,433,233 - Psyr_3724 0.56 +0.2 4,433,314 + Psyr_3724 0.63 +0.6 4,433,314 + Psyr_3724 0.63 -0.5 4,433,315 - Psyr_3724 0.63 +0.3 4,433,338 - Psyr_3724 0.65 -2.0 4,433,341 + Psyr_3724 0.65 -0.3 4,433,341 + Psyr_3724 0.65 +0.2 4,433,454 - Psyr_3724 0.74 -0.5 4,433,464 - Psyr_3724 0.75 +0.1 4,433,464 - Psyr_3724 0.75 +0.1 4,433,464 - Psyr_3724 0.75 -1.0 4,433,469 + Psyr_3724 0.75 -0.7 4,433,469 + Psyr_3724 0.75 -0.0 4,433,469 + Psyr_3724 0.75 +1.0 4,433,469 + Psyr_3724 0.75 +0.5 4,433,590 + Psyr_3724 0.85 -0.6 4,433,590 + Psyr_3724 0.85 +0.4 4,433,590 + Psyr_3724 0.85 +1.1 4,433,590 + Psyr_3724 0.85 -3.9 4,433,590 + Psyr_3724 0.85 -1.3 4,433,590 + Psyr_3724 0.85 +0.4 4,433,590 + Psyr_3724 0.85 +1.1 4,433,591 - Psyr_3724 0.85 -0.6 4,433,591 - Psyr_3724 0.85 -0.2 4,433,591 - Psyr_3724 0.85 -0.1 4,433,591 - Psyr_3724 0.85 -1.6 4,433,591 - Psyr_3724 0.85 +0.2 4,433,591 - Psyr_3724 0.85 +0.2 4,433,591 - Psyr_3724 0.85 -1.4 4,433,591 - Psyr_3724 0.85 +0.3 4,433,591 - Psyr_3724 0.85 -1.1 4,433,591 - Psyr_3724 0.85 +0.1 4,433,594 + Psyr_3724 0.85 -1.0 4,433,604 - Psyr_3724 0.86 +1.7 4,433,652 - Psyr_3724 0.90 -1.4 4,433,707 - -0.9 4,433,707 - +0.7 4,433,707 - -0.1 4,433,752 + -0.0 4,433,752 + +0.1 4,433,753 - +0.0 4,433,753 - +0.7 4,433,857 + +0.7 4,433,857 + -0.7 4,433,857 + -1.6 4,433,857 + +0.2 4,433,858 - +0.1 4,433,858 - +0.5 4,433,858 - -0.1 4,433,858 - +0.9 4,433,858 - -2.2 4,433,858 - -0.6 4,433,860 + -0.1 4,433,860 + -1.4 4,433,860 + +0.3 4,433,860 + -0.5 4,433,860 + +0.5 4,433,860 + +0.2 4,433,860 + +0.2 4,433,860 + +0.2 4,433,860 + -0.6 4,433,861 - +0.3 4,433,861 - +0.4 4,433,861 - +0.7 4,433,861 - +1.9 4,433,861 - -0.8 4,433,861 - +0.0 4,433,864 + -0.2 4,433,931 + -0.4 4,433,931 + +0.1 4,433,942 - Psyr_3725 0.11 +2.3 4,433,963 + Psyr_3725 0.12 +0.4 4,433,963 + Psyr_3725 0.12 -1.3 4,433,963 + Psyr_3725 0.12 +0.6 4,433,964 - Psyr_3725 0.12 -0.2 4,433,964 - Psyr_3725 0.12 +0.7 4,433,964 - Psyr_3725 0.12 +1.4 4,433,969 + Psyr_3725 0.12 +1.3 4,433,969 + Psyr_3725 0.12 +0.8 4,433,970 - Psyr_3725 0.12 +0.7 4,433,970 - Psyr_3725 0.12 -0.2 4,434,042 + Psyr_3725 0.17 -0.8 4,434,043 - Psyr_3725 0.17 -2.3 4,434,043 - Psyr_3725 0.17 -1.0 4,434,043 - Psyr_3725 0.17 -0.6 4,434,160 + Psyr_3725 0.25 +1.7 4,434,225 + Psyr_3725 0.29 -1.8 4,434,225 + Psyr_3725 0.29 -1.8 4,434,226 - Psyr_3725 0.29 +1.2 4,434,237 - Psyr_3725 0.30 +0.3 4,434,237 - Psyr_3725 0.30 +0.2 4,434,262 + Psyr_3725 0.31 -1.1 4,434,262 + Psyr_3725 0.31 -0.4 4,434,263 - Psyr_3725 0.31 -0.3 4,434,263 - Psyr_3725 0.31 -0.1 4,434,305 - Psyr_3725 0.34 -0.9 4,434,309 + Psyr_3725 0.34 +0.4 4,434,309 + Psyr_3725 0.34 +1.1 4,434,310 - Psyr_3725 0.34 +0.4 4,434,310 - Psyr_3725 0.34 +0.6 4,434,310 - Psyr_3725 0.34 +0.8 4,434,310 - Psyr_3725 0.34 -0.8 4,434,352 + Psyr_3725 0.37 -0.6 4,434,352 + Psyr_3725 0.37 +0.4 4,434,352 + Psyr_3725 0.37 -1.4 4,434,353 - Psyr_3725 0.37 +0.2 4,434,353 - Psyr_3725 0.37 -0.3 4,434,404 + Psyr_3725 0.40 -0.0 4,434,404 + Psyr_3725 0.40 -0.6 4,434,405 - Psyr_3725 0.40 -3.4 4,434,405 - Psyr_3725 0.40 +0.6 4,434,405 - Psyr_3725 0.40 +0.9 4,434,405 - Psyr_3725 0.40 +1.2 4,434,566 - Psyr_3725 0.51 -0.6 4,434,617 - Psyr_3725 0.54 +0.3 4,434,763 + Psyr_3725 0.63 +1.9
Or see this region's nucleotide sequence