Experiment: KB with D-Salicin 240 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0237 and Psyr_0238 are separated by 74 nucleotides Psyr_0238 and Psyr_0239 are separated by 25 nucleotides Psyr_0239 and Psyr_0240 overlap by 4 nucleotides Psyr_0240 and Psyr_0241 are separated by 49 nucleotides
Psyr_0237: Psyr_0237 - alanine racemase, at 250,813 to 251,886
_0237
Psyr_0238: Psyr_0238 - Helix-turn-helix motif protein, at 251,961 to 252,560
_0238
Psyr_0239: Psyr_0239 - cytochrome c5, at 252,586 to 252,909
_0239
Psyr_0240: Psyr_0240 - hypothetical protein, at 252,906 to 253,160
_0240
Psyr_0241: Psyr_0241 - conserved hypothetical protein, at 253,210 to 255,141
_0241
Position (kb) 252
253 Strain fitness (log2 ratio) -2
-1
0
1
2 at 251.872 kb on + strand at 251.873 kb on - strand at 251.940 kb on + strand at 251.940 kb on + strand at 251.941 kb on - strand at 252.237 kb on + strand, within Psyr_0238 at 252.237 kb on + strand, within Psyr_0238 at 252.238 kb on - strand, within Psyr_0238 at 252.260 kb on + strand, within Psyr_0238 at 252.260 kb on + strand, within Psyr_0238 at 252.260 kb on + strand, within Psyr_0238 at 252.260 kb on + strand, within Psyr_0238 at 252.261 kb on - strand, within Psyr_0238 at 252.261 kb on - strand, within Psyr_0238 at 252.261 kb on - strand, within Psyr_0238 at 252.261 kb on - strand, within Psyr_0238 at 252.261 kb on - strand, within Psyr_0238 at 252.261 kb on - strand, within Psyr_0238 at 252.261 kb on - strand, within Psyr_0238 at 252.261 kb on - strand, within Psyr_0238 at 252.261 kb on - strand, within Psyr_0238 at 252.262 kb on + strand, within Psyr_0238 at 252.339 kb on + strand, within Psyr_0238 at 252.441 kb on - strand, within Psyr_0238 at 252.441 kb on - strand, within Psyr_0238 at 252.444 kb on + strand, within Psyr_0238 at 252.444 kb on + strand, within Psyr_0238 at 252.444 kb on + strand, within Psyr_0238 at 252.444 kb on + strand, within Psyr_0238 at 252.444 kb on + strand, within Psyr_0238 at 252.444 kb on + strand, within Psyr_0238 at 252.445 kb on - strand, within Psyr_0238 at 252.445 kb on - strand, within Psyr_0238 at 252.445 kb on - strand, within Psyr_0238 at 252.445 kb on - strand, within Psyr_0238 at 252.445 kb on - strand, within Psyr_0238 at 252.445 kb on - strand, within Psyr_0238 at 252.445 kb on - strand, within Psyr_0238 at 252.445 kb on - strand, within Psyr_0238 at 252.445 kb on - strand, within Psyr_0238 at 252.445 kb on - strand, within Psyr_0238 at 252.445 kb on - strand, within Psyr_0238 at 252.445 kb on - strand, within Psyr_0238 at 252.445 kb on - strand, within Psyr_0238 at 252.445 kb on - strand, within Psyr_0238 at 252.468 kb on + strand, within Psyr_0238 at 252.468 kb on + strand, within Psyr_0238 at 252.468 kb on + strand, within Psyr_0238 at 252.468 kb on + strand, within Psyr_0238 at 252.468 kb on + strand, within Psyr_0238 at 252.468 kb on + strand, within Psyr_0238 at 252.468 kb on + strand, within Psyr_0238 at 252.468 kb on + strand, within Psyr_0238 at 252.469 kb on - strand, within Psyr_0238 at 252.469 kb on - strand, within Psyr_0238 at 252.469 kb on - strand, within Psyr_0238 at 252.469 kb on - strand, within Psyr_0238 at 252.469 kb on - strand, within Psyr_0238 at 252.471 kb on + strand, within Psyr_0238 at 252.471 kb on + strand, within Psyr_0238 at 252.471 kb on + strand, within Psyr_0238 at 252.472 kb on - strand, within Psyr_0238 at 252.503 kb on + strand at 252.716 kb on + strand, within Psyr_0239 at 252.716 kb on + strand, within Psyr_0239 at 252.716 kb on + strand, within Psyr_0239 at 252.716 kb on + strand, within Psyr_0239 at 252.716 kb on + strand, within Psyr_0239 at 252.716 kb on + strand, within Psyr_0239 at 252.716 kb on + strand, within Psyr_0239 at 252.716 kb on + strand, within Psyr_0239 at 252.717 kb on - strand, within Psyr_0239 at 252.717 kb on - strand, within Psyr_0239 at 253.007 kb on + strand, within Psyr_0240 at 253.031 kb on + strand, within Psyr_0240 at 253.031 kb on + strand, within Psyr_0240 at 253.031 kb on + strand, within Psyr_0240 at 253.031 kb on + strand, within Psyr_0240 at 253.032 kb on - strand, within Psyr_0240 at 253.032 kb on - strand, within Psyr_0240 at 253.032 kb on - strand, within Psyr_0240 at 253.119 kb on + strand, within Psyr_0240 at 253.119 kb on + strand, within Psyr_0240 at 253.119 kb on + strand, within Psyr_0240 at 253.119 kb on + strand, within Psyr_0240 at 253.119 kb on + strand, within Psyr_0240 at 253.120 kb on - strand, within Psyr_0240 at 253.120 kb on - strand, within Psyr_0240 at 253.121 kb on + strand, within Psyr_0240 at 253.216 kb on + strand at 253.331 kb on - strand at 253.331 kb on - strand at 253.372 kb on + strand at 253.372 kb on + strand at 253.372 kb on + strand at 253.373 kb on - strand at 253.582 kb on + strand, within Psyr_0241 at 253.582 kb on + strand, within Psyr_0241 at 253.597 kb on + strand, within Psyr_0241 at 253.597 kb on + strand, within Psyr_0241 at 253.597 kb on + strand, within Psyr_0241 at 253.598 kb on - strand, within Psyr_0241 at 253.598 kb on - strand, within Psyr_0241 at 253.598 kb on - strand, within Psyr_0241 at 253.598 kb on - strand, within Psyr_0241 at 253.598 kb on - strand, within Psyr_0241 at 253.798 kb on + strand, within Psyr_0241 at 253.798 kb on + strand, within Psyr_0241 at 253.798 kb on + strand, within Psyr_0241 at 253.798 kb on + strand, within Psyr_0241 at 253.798 kb on + strand, within Psyr_0241 at 253.798 kb on + strand, within Psyr_0241 at 253.799 kb on - strand, within Psyr_0241 at 253.799 kb on - strand, within Psyr_0241 at 253.799 kb on - strand, within Psyr_0241 at 253.799 kb on - strand, within Psyr_0241 at 253.799 kb on - strand, within Psyr_0241 at 253.799 kb on - strand, within Psyr_0241 at 253.799 kb on - strand, within Psyr_0241 at 253.799 kb on - strand, within Psyr_0241 at 253.799 kb on - strand, within Psyr_0241 at 253.799 kb on - strand, within Psyr_0241 at 253.799 kb on - strand, within Psyr_0241 at 253.799 kb on - strand, within Psyr_0241 at 253.866 kb on + strand, within Psyr_0241 at 253.888 kb on - strand, within Psyr_0241 at 253.888 kb on - strand, within Psyr_0241
Per-strain Table
Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml remove 251,872 + +0.2 251,873 - -0.7 251,940 + +0.3 251,940 + +0.0 251,941 - +0.1 252,237 + Psyr_0238 0.46 -0.4 252,237 + Psyr_0238 0.46 -0.2 252,238 - Psyr_0238 0.46 -0.1 252,260 + Psyr_0238 0.50 +0.4 252,260 + Psyr_0238 0.50 +0.3 252,260 + Psyr_0238 0.50 +0.6 252,260 + Psyr_0238 0.50 +1.1 252,261 - Psyr_0238 0.50 -0.8 252,261 - Psyr_0238 0.50 -0.5 252,261 - Psyr_0238 0.50 +0.4 252,261 - Psyr_0238 0.50 +2.5 252,261 - Psyr_0238 0.50 -1.9 252,261 - Psyr_0238 0.50 -0.2 252,261 - Psyr_0238 0.50 +0.0 252,261 - Psyr_0238 0.50 +0.0 252,261 - Psyr_0238 0.50 -0.4 252,262 + Psyr_0238 0.50 +1.2 252,339 + Psyr_0238 0.63 -1.2 252,441 - Psyr_0238 0.80 +0.6 252,441 - Psyr_0238 0.80 +0.1 252,444 + Psyr_0238 0.81 +0.4 252,444 + Psyr_0238 0.81 -0.0 252,444 + Psyr_0238 0.81 -0.1 252,444 + Psyr_0238 0.81 -0.7 252,444 + Psyr_0238 0.81 +1.9 252,444 + Psyr_0238 0.81 +0.5 252,445 - Psyr_0238 0.81 -0.4 252,445 - Psyr_0238 0.81 +0.6 252,445 - Psyr_0238 0.81 +0.2 252,445 - Psyr_0238 0.81 -0.2 252,445 - Psyr_0238 0.81 +0.3 252,445 - Psyr_0238 0.81 -1.0 252,445 - Psyr_0238 0.81 +1.2 252,445 - Psyr_0238 0.81 +0.5 252,445 - Psyr_0238 0.81 +0.3 252,445 - Psyr_0238 0.81 +0.6 252,445 - Psyr_0238 0.81 -1.0 252,445 - Psyr_0238 0.81 -0.4 252,445 - Psyr_0238 0.81 -0.5 252,445 - Psyr_0238 0.81 +0.2 252,468 + Psyr_0238 0.84 -0.3 252,468 + Psyr_0238 0.84 -0.8 252,468 + Psyr_0238 0.84 +0.9 252,468 + Psyr_0238 0.84 -1.5 252,468 + Psyr_0238 0.84 -0.6 252,468 + Psyr_0238 0.84 -0.1 252,468 + Psyr_0238 0.84 +1.6 252,468 + Psyr_0238 0.84 +0.2 252,469 - Psyr_0238 0.85 -1.5 252,469 - Psyr_0238 0.85 -0.4 252,469 - Psyr_0238 0.85 -0.0 252,469 - Psyr_0238 0.85 +0.0 252,469 - Psyr_0238 0.85 -1.1 252,471 + Psyr_0238 0.85 -0.5 252,471 + Psyr_0238 0.85 -0.3 252,471 + Psyr_0238 0.85 -0.8 252,472 - Psyr_0238 0.85 -0.3 252,503 + +1.5 252,716 + Psyr_0239 0.40 +0.5 252,716 + Psyr_0239 0.40 +1.0 252,716 + Psyr_0239 0.40 -0.9 252,716 + Psyr_0239 0.40 -0.2 252,716 + Psyr_0239 0.40 -0.2 252,716 + Psyr_0239 0.40 +0.6 252,716 + Psyr_0239 0.40 +0.5 252,716 + Psyr_0239 0.40 +0.2 252,717 - Psyr_0239 0.40 -1.0 252,717 - Psyr_0239 0.40 -0.5 253,007 + Psyr_0240 0.40 -0.2 253,031 + Psyr_0240 0.49 +0.3 253,031 + Psyr_0240 0.49 +2.0 253,031 + Psyr_0240 0.49 +0.9 253,031 + Psyr_0240 0.49 +0.6 253,032 - Psyr_0240 0.49 -0.7 253,032 - Psyr_0240 0.49 -0.2 253,032 - Psyr_0240 0.49 -1.2 253,119 + Psyr_0240 0.84 -0.7 253,119 + Psyr_0240 0.84 +0.5 253,119 + Psyr_0240 0.84 +0.7 253,119 + Psyr_0240 0.84 -0.9 253,119 + Psyr_0240 0.84 -0.4 253,120 - Psyr_0240 0.84 -0.4 253,120 - Psyr_0240 0.84 +0.4 253,121 + Psyr_0240 0.84 -0.5 253,216 + +0.5 253,331 - +0.9 253,331 - +1.0 253,372 + -1.1 253,372 + -0.3 253,372 + -0.1 253,373 - +1.0 253,582 + Psyr_0241 0.19 -0.2 253,582 + Psyr_0241 0.19 -2.1 253,597 + Psyr_0241 0.20 +0.0 253,597 + Psyr_0241 0.20 +0.9 253,597 + Psyr_0241 0.20 +0.5 253,598 - Psyr_0241 0.20 -0.5 253,598 - Psyr_0241 0.20 -0.5 253,598 - Psyr_0241 0.20 +1.0 253,598 - Psyr_0241 0.20 +0.4 253,598 - Psyr_0241 0.20 +1.3 253,798 + Psyr_0241 0.30 +0.7 253,798 + Psyr_0241 0.30 -1.3 253,798 + Psyr_0241 0.30 +0.4 253,798 + Psyr_0241 0.30 +1.5 253,798 + Psyr_0241 0.30 +0.2 253,798 + Psyr_0241 0.30 -0.1 253,799 - Psyr_0241 0.30 -0.3 253,799 - Psyr_0241 0.30 -0.1 253,799 - Psyr_0241 0.30 -1.4 253,799 - Psyr_0241 0.30 +0.1 253,799 - Psyr_0241 0.30 -2.1 253,799 - Psyr_0241 0.30 -1.0 253,799 - Psyr_0241 0.30 -1.5 253,799 - Psyr_0241 0.30 -0.0 253,799 - Psyr_0241 0.30 +1.3 253,799 - Psyr_0241 0.30 -0.2 253,799 - Psyr_0241 0.30 +0.3 253,799 - Psyr_0241 0.30 -0.8 253,866 + Psyr_0241 0.34 -1.3 253,888 - Psyr_0241 0.35 -0.4 253,888 - Psyr_0241 0.35 -0.2
Or see this region's nucleotide sequence