Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4903 and Psyr_4904 overlap by 4 nucleotides Psyr_4904 and Psyr_4905 are separated by 93 nucleotides Psyr_4905 and Psyr_4906 are separated by 202 nucleotides Psyr_4906 and Psyr_4907 are separated by 312 nucleotides
Psyr_4903: Psyr_4903 - hypothetical protein, at 5,816,911 to 5,818,032
_4903
Psyr_4904: Psyr_4904 - hypothetical protein, at 5,818,029 to 5,818,400
_4904
Psyr_4905: Psyr_4905 - conserved hypothetical protein, at 5,818,494 to 5,818,727
_4905
Psyr_4906: Psyr_4906 - lipoprotein, putative, at 5,818,930 to 5,819,208
_4906
Psyr_4907: Psyr_4907 - PAS, at 5,819,521 to 5,820,867
_4907
Position (kb) 5818
5819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5817.530 kb on + strand, within Psyr_4903 at 5817.530 kb on + strand, within Psyr_4903 at 5817.530 kb on + strand, within Psyr_4903 at 5817.530 kb on + strand, within Psyr_4903 at 5817.530 kb on + strand, within Psyr_4903 at 5817.530 kb on + strand, within Psyr_4903 at 5817.530 kb on + strand, within Psyr_4903 at 5817.530 kb on + strand, within Psyr_4903 at 5817.530 kb on + strand, within Psyr_4903 at 5817.530 kb on + strand, within Psyr_4903 at 5817.530 kb on + strand, within Psyr_4903 at 5817.531 kb on - strand, within Psyr_4903 at 5817.531 kb on - strand, within Psyr_4903 at 5817.531 kb on - strand, within Psyr_4903 at 5817.531 kb on - strand, within Psyr_4903 at 5817.531 kb on - strand, within Psyr_4903 at 5817.531 kb on - strand, within Psyr_4903 at 5817.531 kb on - strand, within Psyr_4903 at 5817.531 kb on - strand, within Psyr_4903 at 5817.531 kb on - strand, within Psyr_4903 at 5817.643 kb on - strand, within Psyr_4903 at 5817.661 kb on - strand, within Psyr_4903 at 5817.669 kb on + strand, within Psyr_4903 at 5817.669 kb on + strand, within Psyr_4903 at 5817.669 kb on + strand, within Psyr_4903 at 5817.669 kb on + strand, within Psyr_4903 at 5817.670 kb on - strand, within Psyr_4903 at 5817.767 kb on + strand, within Psyr_4903 at 5817.767 kb on + strand, within Psyr_4903 at 5817.768 kb on - strand, within Psyr_4903 at 5817.787 kb on + strand, within Psyr_4903 at 5817.787 kb on + strand, within Psyr_4903 at 5817.787 kb on + strand, within Psyr_4903 at 5817.787 kb on + strand, within Psyr_4903 at 5817.788 kb on - strand, within Psyr_4903 at 5817.788 kb on - strand, within Psyr_4903 at 5817.788 kb on - strand, within Psyr_4903 at 5817.788 kb on - strand, within Psyr_4903 at 5817.798 kb on + strand, within Psyr_4903 at 5817.799 kb on - strand, within Psyr_4903 at 5817.816 kb on + strand, within Psyr_4903 at 5817.816 kb on + strand, within Psyr_4903 at 5817.816 kb on + strand, within Psyr_4903 at 5817.816 kb on + strand, within Psyr_4903 at 5817.816 kb on + strand, within Psyr_4903 at 5817.817 kb on - strand, within Psyr_4903 at 5817.817 kb on - strand, within Psyr_4903 at 5817.817 kb on - strand, within Psyr_4903 at 5817.820 kb on + strand, within Psyr_4903 at 5817.821 kb on - strand, within Psyr_4903 at 5817.821 kb on - strand, within Psyr_4903 at 5817.821 kb on - strand, within Psyr_4903 at 5817.826 kb on - strand, within Psyr_4903 at 5817.914 kb on + strand, within Psyr_4903 at 5817.914 kb on + strand, within Psyr_4903 at 5817.914 kb on + strand, within Psyr_4903 at 5817.914 kb on + strand, within Psyr_4903 at 5817.915 kb on - strand, within Psyr_4903 at 5817.915 kb on - strand, within Psyr_4903 at 5817.952 kb on - strand at 5817.995 kb on + strand at 5817.996 kb on - strand at 5818.070 kb on + strand, within Psyr_4904 at 5818.070 kb on + strand, within Psyr_4904 at 5818.070 kb on + strand, within Psyr_4904 at 5818.070 kb on + strand, within Psyr_4904 at 5818.105 kb on + strand, within Psyr_4904 at 5818.106 kb on - strand, within Psyr_4904 at 5818.106 kb on - strand, within Psyr_4904 at 5818.106 kb on - strand, within Psyr_4904 at 5818.106 kb on - strand, within Psyr_4904 at 5818.179 kb on + strand, within Psyr_4904 at 5818.179 kb on + strand, within Psyr_4904 at 5818.180 kb on - strand, within Psyr_4904 at 5818.229 kb on + strand, within Psyr_4904 at 5818.229 kb on + strand, within Psyr_4904 at 5818.230 kb on - strand, within Psyr_4904 at 5818.249 kb on + strand, within Psyr_4904 at 5818.365 kb on - strand at 5818.389 kb on + strand at 5818.389 kb on + strand at 5818.389 kb on + strand at 5818.390 kb on - strand at 5818.390 kb on - strand at 5818.390 kb on - strand at 5818.390 kb on - strand at 5818.390 kb on - strand at 5818.390 kb on - strand at 5818.390 kb on - strand at 5818.391 kb on + strand at 5818.392 kb on - strand at 5818.392 kb on - strand at 5818.392 kb on - strand at 5818.398 kb on + strand at 5818.403 kb on + strand at 5818.439 kb on - strand at 5818.439 kb on - strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.451 kb on + strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.452 kb on - strand at 5818.487 kb on + strand at 5818.487 kb on + strand at 5818.487 kb on + strand at 5818.487 kb on + strand at 5818.487 kb on + strand at 5818.487 kb on + strand at 5818.488 kb on - strand at 5818.488 kb on - strand at 5818.488 kb on - strand at 5818.491 kb on + strand at 5818.491 kb on + strand at 5818.491 kb on + strand at 5818.492 kb on - strand at 5818.492 kb on - strand at 5818.492 kb on - strand at 5818.640 kb on + strand, within Psyr_4905 at 5818.640 kb on + strand, within Psyr_4905 at 5818.640 kb on + strand, within Psyr_4905 at 5818.641 kb on - strand, within Psyr_4905 at 5818.641 kb on - strand, within Psyr_4905 at 5818.641 kb on - strand, within Psyr_4905 at 5818.641 kb on - strand, within Psyr_4905 at 5818.641 kb on - strand, within Psyr_4905 at 5818.661 kb on - strand, within Psyr_4905 at 5818.661 kb on - strand, within Psyr_4905 at 5818.661 kb on - strand, within Psyr_4905 at 5818.661 kb on - strand, within Psyr_4905 at 5818.716 kb on + strand at 5818.728 kb on - strand at 5818.728 kb on - strand at 5818.728 kb on - strand at 5818.875 kb on + strand at 5818.875 kb on + strand at 5818.875 kb on + strand at 5818.903 kb on + strand at 5818.903 kb on + strand at 5818.903 kb on + strand at 5818.904 kb on - strand at 5818.904 kb on - strand at 5818.904 kb on - strand at 5819.255 kb on + strand at 5819.255 kb on + strand at 5819.255 kb on + strand at 5819.256 kb on - strand at 5819.256 kb on - strand at 5819.256 kb on - strand at 5819.256 kb on - strand at 5819.398 kb on + strand at 5819.398 kb on + strand at 5819.398 kb on + strand at 5819.425 kb on + strand at 5819.426 kb on - strand at 5819.429 kb on + strand at 5819.430 kb on - strand at 5819.431 kb on + strand at 5819.432 kb on - strand at 5819.432 kb on - strand at 5819.437 kb on + strand at 5819.491 kb on + strand at 5819.491 kb on + strand at 5819.491 kb on + strand at 5819.491 kb on + strand at 5819.492 kb on - strand at 5819.510 kb on - strand at 5819.520 kb on + strand at 5819.520 kb on + strand at 5819.520 kb on + strand at 5819.521 kb on - strand at 5819.521 kb on - strand at 5819.521 kb on - strand at 5819.532 kb on + strand at 5819.532 kb on + strand at 5819.533 kb on - strand at 5819.533 kb on - strand at 5819.570 kb on + strand at 5819.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 5,817,530 + Psyr_4903 0.55 -0.5 5,817,530 + Psyr_4903 0.55 +0.3 5,817,530 + Psyr_4903 0.55 +0.7 5,817,530 + Psyr_4903 0.55 +0.2 5,817,530 + Psyr_4903 0.55 -0.5 5,817,530 + Psyr_4903 0.55 -0.2 5,817,530 + Psyr_4903 0.55 -0.1 5,817,530 + Psyr_4903 0.55 +0.1 5,817,530 + Psyr_4903 0.55 -0.3 5,817,530 + Psyr_4903 0.55 -0.1 5,817,530 + Psyr_4903 0.55 -1.4 5,817,531 - Psyr_4903 0.55 -0.3 5,817,531 - Psyr_4903 0.55 -0.7 5,817,531 - Psyr_4903 0.55 +0.4 5,817,531 - Psyr_4903 0.55 -0.1 5,817,531 - Psyr_4903 0.55 -0.1 5,817,531 - Psyr_4903 0.55 +0.2 5,817,531 - Psyr_4903 0.55 +1.2 5,817,531 - Psyr_4903 0.55 -1.4 5,817,531 - Psyr_4903 0.55 -0.0 5,817,643 - Psyr_4903 0.65 -1.1 5,817,661 - Psyr_4903 0.67 -1.3 5,817,669 + Psyr_4903 0.68 +0.2 5,817,669 + Psyr_4903 0.68 -0.8 5,817,669 + Psyr_4903 0.68 +0.2 5,817,669 + Psyr_4903 0.68 +0.7 5,817,670 - Psyr_4903 0.68 -0.6 5,817,767 + Psyr_4903 0.76 -0.3 5,817,767 + Psyr_4903 0.76 -0.3 5,817,768 - Psyr_4903 0.76 -0.8 5,817,787 + Psyr_4903 0.78 +0.2 5,817,787 + Psyr_4903 0.78 +0.6 5,817,787 + Psyr_4903 0.78 +1.2 5,817,787 + Psyr_4903 0.78 -1.1 5,817,788 - Psyr_4903 0.78 +0.4 5,817,788 - Psyr_4903 0.78 -2.0 5,817,788 - Psyr_4903 0.78 +0.1 5,817,788 - Psyr_4903 0.78 -0.2 5,817,798 + Psyr_4903 0.79 +0.2 5,817,799 - Psyr_4903 0.79 -0.7 5,817,816 + Psyr_4903 0.81 -0.1 5,817,816 + Psyr_4903 0.81 +1.2 5,817,816 + Psyr_4903 0.81 -0.8 5,817,816 + Psyr_4903 0.81 +0.3 5,817,816 + Psyr_4903 0.81 +0.7 5,817,817 - Psyr_4903 0.81 -0.4 5,817,817 - Psyr_4903 0.81 +1.0 5,817,817 - Psyr_4903 0.81 -1.0 5,817,820 + Psyr_4903 0.81 +0.6 5,817,821 - Psyr_4903 0.81 -0.4 5,817,821 - Psyr_4903 0.81 -1.1 5,817,821 - Psyr_4903 0.81 -0.3 5,817,826 - Psyr_4903 0.82 -0.3 5,817,914 + Psyr_4903 0.89 -1.6 5,817,914 + Psyr_4903 0.89 +4.2 5,817,914 + Psyr_4903 0.89 -0.3 5,817,914 + Psyr_4903 0.89 -0.4 5,817,915 - Psyr_4903 0.89 -0.6 5,817,915 - Psyr_4903 0.89 -0.0 5,817,952 - -0.0 5,817,995 + -1.3 5,817,996 - -0.2 5,818,070 + Psyr_4904 0.11 +0.2 5,818,070 + Psyr_4904 0.11 +0.5 5,818,070 + Psyr_4904 0.11 +0.7 5,818,070 + Psyr_4904 0.11 -1.4 5,818,105 + Psyr_4904 0.20 -2.0 5,818,106 - Psyr_4904 0.21 -0.2 5,818,106 - Psyr_4904 0.21 -0.7 5,818,106 - Psyr_4904 0.21 +0.5 5,818,106 - Psyr_4904 0.21 -0.7 5,818,179 + Psyr_4904 0.40 +0.2 5,818,179 + Psyr_4904 0.40 -0.3 5,818,180 - Psyr_4904 0.41 -1.0 5,818,229 + Psyr_4904 0.54 +0.7 5,818,229 + Psyr_4904 0.54 -1.7 5,818,230 - Psyr_4904 0.54 +0.7 5,818,249 + Psyr_4904 0.59 +0.0 5,818,365 - -0.8 5,818,389 + -0.9 5,818,389 + -0.5 5,818,389 + -0.2 5,818,390 - +0.5 5,818,390 - -2.7 5,818,390 - -0.7 5,818,390 - +0.1 5,818,390 - -0.3 5,818,390 - -1.3 5,818,390 - +0.3 5,818,391 + -0.2 5,818,392 - -0.1 5,818,392 - -0.0 5,818,392 - -1.1 5,818,398 + +1.1 5,818,403 + +1.9 5,818,439 - +0.9 5,818,439 - +0.6 5,818,451 + -1.5 5,818,451 + +1.2 5,818,451 + +0.7 5,818,451 + -0.7 5,818,451 + -1.3 5,818,451 + +0.6 5,818,451 + -1.9 5,818,451 + +1.5 5,818,451 + +0.5 5,818,451 + -0.8 5,818,451 + -0.5 5,818,451 + +2.4 5,818,451 + -0.1 5,818,451 + -0.7 5,818,451 + -2.7 5,818,451 + +0.7 5,818,451 + +0.3 5,818,451 + +0.1 5,818,451 + -0.4 5,818,451 + +0.1 5,818,451 + +0.8 5,818,451 + +0.2 5,818,451 + +0.7 5,818,451 + +2.0 5,818,452 - +0.3 5,818,452 - -0.8 5,818,452 - -0.7 5,818,452 - +0.6 5,818,452 - +0.1 5,818,452 - -0.3 5,818,452 - -1.0 5,818,452 - -1.2 5,818,452 - -0.4 5,818,452 - -0.8 5,818,452 - -0.4 5,818,452 - -0.2 5,818,452 - +1.0 5,818,452 - +0.6 5,818,452 - +0.7 5,818,452 - -0.2 5,818,452 - -1.4 5,818,452 - +0.2 5,818,452 - -0.5 5,818,452 - -0.4 5,818,452 - -1.3 5,818,452 - +0.6 5,818,452 - -0.5 5,818,452 - -0.2 5,818,452 - -0.9 5,818,452 - -0.7 5,818,452 - +1.2 5,818,452 - +0.9 5,818,452 - -0.3 5,818,452 - -1.2 5,818,452 - -0.5 5,818,452 - -0.0 5,818,487 + -1.7 5,818,487 + +0.5 5,818,487 + -0.7 5,818,487 + -0.4 5,818,487 + -0.5 5,818,487 + -0.8 5,818,488 - +0.3 5,818,488 - +0.2 5,818,488 - -1.5 5,818,491 + -0.0 5,818,491 + -0.4 5,818,491 + -0.3 5,818,492 - -0.6 5,818,492 - -0.4 5,818,492 - -0.8 5,818,640 + Psyr_4905 0.62 -0.6 5,818,640 + Psyr_4905 0.62 -2.2 5,818,640 + Psyr_4905 0.62 -3.0 5,818,641 - Psyr_4905 0.63 -0.2 5,818,641 - Psyr_4905 0.63 +1.0 5,818,641 - Psyr_4905 0.63 -2.0 5,818,641 - Psyr_4905 0.63 -0.5 5,818,641 - Psyr_4905 0.63 -0.5 5,818,661 - Psyr_4905 0.71 +0.6 5,818,661 - Psyr_4905 0.71 -1.2 5,818,661 - Psyr_4905 0.71 -0.7 5,818,661 - Psyr_4905 0.71 -0.0 5,818,716 + -1.0 5,818,728 - -1.6 5,818,728 - +0.1 5,818,728 - -0.3 5,818,875 + -1.3 5,818,875 + +0.1 5,818,875 + +0.9 5,818,903 + -0.7 5,818,903 + -0.9 5,818,903 + -0.5 5,818,904 - -0.2 5,818,904 - +0.5 5,818,904 - +0.7 5,819,255 + -0.2 5,819,255 + +1.6 5,819,255 + +1.0 5,819,256 - +1.0 5,819,256 - -0.5 5,819,256 - -0.1 5,819,256 - +0.4 5,819,398 + -0.7 5,819,398 + -0.3 5,819,398 + +0.6 5,819,425 + +0.1 5,819,426 - +0.5 5,819,429 + +0.4 5,819,430 - +0.2 5,819,431 + -1.2 5,819,432 - +0.7 5,819,432 - +0.1 5,819,437 + +0.4 5,819,491 + -0.2 5,819,491 + -0.3 5,819,491 + -0.4 5,819,491 + -0.3 5,819,492 - -0.4 5,819,510 - -0.7 5,819,520 + -0.4 5,819,520 + -0.9 5,819,520 + -0.4 5,819,521 - -0.4 5,819,521 - +0.5 5,819,521 - +0.2 5,819,532 + +0.3 5,819,532 + +0.3 5,819,533 - -0.7 5,819,533 - -0.2 5,819,570 + +0.5 5,819,571 - -0.5
Or see this region's nucleotide sequence