Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4262 and Psyr_4263 are separated by 74 nucleotides Psyr_4263 and Psyr_4264 are separated by 60 nucleotides Psyr_4264 and Psyr_4265 are separated by 382 nucleotides
Psyr_4262: Psyr_4262 - lipoprotein, putative, at 5,080,430 to 5,080,783
_4262
Psyr_4263: Psyr_4263 - transcription elongation factor GreB, at 5,080,858 to 5,081,355
_4263
Psyr_4264: Psyr_4264 - ABC transporter, at 5,081,416 to 5,083,080
_4264
Psyr_4265: Psyr_4265 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 5,083,463 to 5,087,299
_4265
Position (kb) 5081
5082
5083
5084 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5080.606 kb on - strand, within Psyr_4262 at 5080.632 kb on - strand, within Psyr_4262 at 5080.770 kb on - strand at 5080.770 kb on - strand at 5080.840 kb on + strand at 5080.840 kb on + strand at 5080.841 kb on - strand at 5080.841 kb on - strand at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5081.007 kb on + strand, within Psyr_4263 at 5081.007 kb on + strand, within Psyr_4263 at 5081.008 kb on - strand, within Psyr_4263 at 5081.008 kb on - strand, within Psyr_4263 at 5081.075 kb on - strand, within Psyr_4263 at 5081.075 kb on - strand, within Psyr_4263 at 5081.075 kb on - strand, within Psyr_4263 at 5081.492 kb on + strand at 5081.493 kb on - strand at 5081.493 kb on - strand at 5081.501 kb on + strand at 5081.501 kb on + strand at 5081.501 kb on + strand at 5081.501 kb on + strand at 5081.502 kb on - strand at 5081.502 kb on - strand at 5081.560 kb on + strand at 5081.801 kb on + strand, within Psyr_4264 at 5081.801 kb on + strand, within Psyr_4264 at 5081.801 kb on + strand, within Psyr_4264 at 5081.802 kb on - strand, within Psyr_4264 at 5081.802 kb on - strand, within Psyr_4264 at 5081.802 kb on - strand, within Psyr_4264 at 5081.802 kb on - strand, within Psyr_4264 at 5081.802 kb on - strand, within Psyr_4264 at 5081.802 kb on - strand, within Psyr_4264 at 5081.802 kb on - strand, within Psyr_4264 at 5081.802 kb on - strand, within Psyr_4264 at 5081.805 kb on + strand, within Psyr_4264 at 5081.806 kb on - strand, within Psyr_4264 at 5081.822 kb on + strand, within Psyr_4264 at 5081.822 kb on + strand, within Psyr_4264 at 5081.822 kb on + strand, within Psyr_4264 at 5081.822 kb on + strand, within Psyr_4264 at 5081.822 kb on + strand, within Psyr_4264 at 5081.822 kb on + strand, within Psyr_4264 at 5081.822 kb on + strand, within Psyr_4264 at 5081.823 kb on - strand, within Psyr_4264 at 5081.823 kb on - strand, within Psyr_4264 at 5081.823 kb on - strand, within Psyr_4264 at 5081.823 kb on - strand, within Psyr_4264 at 5081.826 kb on + strand, within Psyr_4264 at 5082.146 kb on + strand, within Psyr_4264 at 5082.146 kb on + strand, within Psyr_4264 at 5082.146 kb on + strand, within Psyr_4264 at 5082.146 kb on + strand, within Psyr_4264 at 5082.146 kb on + strand, within Psyr_4264 at 5082.147 kb on - strand, within Psyr_4264 at 5082.147 kb on - strand, within Psyr_4264 at 5082.147 kb on - strand, within Psyr_4264 at 5082.147 kb on - strand, within Psyr_4264 at 5082.147 kb on - strand, within Psyr_4264 at 5082.350 kb on + strand, within Psyr_4264 at 5082.350 kb on + strand, within Psyr_4264 at 5082.350 kb on + strand, within Psyr_4264 at 5082.351 kb on - strand, within Psyr_4264 at 5082.362 kb on + strand, within Psyr_4264 at 5082.422 kb on + strand, within Psyr_4264 at 5082.423 kb on - strand, within Psyr_4264 at 5082.949 kb on - strand at 5083.064 kb on + strand at 5083.064 kb on + strand at 5083.064 kb on + strand at 5083.064 kb on + strand at 5083.065 kb on - strand at 5083.070 kb on + strand at 5083.070 kb on + strand at 5083.070 kb on + strand at 5083.071 kb on - strand at 5083.071 kb on - strand at 5083.071 kb on - strand at 5083.071 kb on - strand at 5083.093 kb on + strand at 5083.093 kb on + strand at 5083.102 kb on + strand at 5083.103 kb on - strand at 5083.156 kb on + strand at 5083.156 kb on + strand at 5083.157 kb on - strand at 5083.201 kb on - strand at 5083.201 kb on - strand at 5083.201 kb on - strand at 5083.238 kb on + strand at 5083.238 kb on + strand at 5083.239 kb on - strand at 5083.239 kb on - strand at 5083.240 kb on + strand at 5083.240 kb on + strand at 5083.241 kb on - strand at 5083.241 kb on - strand at 5083.376 kb on + strand at 5083.413 kb on + strand at 5083.418 kb on + strand at 5083.418 kb on + strand at 5083.418 kb on + strand at 5083.418 kb on + strand at 5083.418 kb on + strand at 5083.419 kb on - strand at 5083.419 kb on - strand at 5083.419 kb on - strand at 5083.419 kb on - strand at 5083.419 kb on - strand at 5083.419 kb on - strand at 5083.419 kb on - strand at 5083.422 kb on + strand at 5083.422 kb on + strand at 5083.423 kb on - strand at 5083.423 kb on - strand at 5083.501 kb on + strand at 5083.646 kb on + strand at 5083.913 kb on + strand, within Psyr_4265 at 5083.913 kb on + strand, within Psyr_4265 at 5083.913 kb on + strand, within Psyr_4265 at 5083.913 kb on + strand, within Psyr_4265 at 5083.913 kb on + strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.916 kb on - strand, within Psyr_4265 at 5083.916 kb on - strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.945 kb on + strand, within Psyr_4265 at 5083.945 kb on + strand, within Psyr_4265 at 5083.945 kb on + strand, within Psyr_4265 at 5083.945 kb on + strand, within Psyr_4265 at 5083.945 kb on + strand, within Psyr_4265 at 5083.945 kb on + strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.947 kb on + strand, within Psyr_4265 at 5083.947 kb on + strand, within Psyr_4265 at 5083.948 kb on - strand, within Psyr_4265 at 5083.948 kb on - strand, within Psyr_4265 at 5083.948 kb on - strand, within Psyr_4265 at 5083.982 kb on + strand, within Psyr_4265
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 5,080,606 - Psyr_4262 0.50 -1.0 5,080,632 - Psyr_4262 0.57 -1.5 5,080,770 - +0.3 5,080,770 - +0.2 5,080,840 + -1.0 5,080,840 + -0.7 5,080,841 - -1.5 5,080,841 - +0.1 5,080,942 + Psyr_4263 0.17 +0.7 5,080,942 + Psyr_4263 0.17 -1.0 5,080,942 + Psyr_4263 0.17 +0.3 5,080,942 + Psyr_4263 0.17 +1.5 5,080,943 - Psyr_4263 0.17 +0.2 5,080,943 - Psyr_4263 0.17 +1.5 5,080,943 - Psyr_4263 0.17 -2.9 5,080,943 - Psyr_4263 0.17 -0.2 5,080,943 - Psyr_4263 0.17 +0.3 5,080,943 - Psyr_4263 0.17 +0.2 5,080,943 - Psyr_4263 0.17 +0.4 5,080,943 - Psyr_4263 0.17 -0.3 5,081,007 + Psyr_4263 0.30 +1.2 5,081,007 + Psyr_4263 0.30 +0.6 5,081,008 - Psyr_4263 0.30 +0.5 5,081,008 - Psyr_4263 0.30 +0.1 5,081,075 - Psyr_4263 0.44 +0.6 5,081,075 - Psyr_4263 0.44 -0.8 5,081,075 - Psyr_4263 0.44 +1.4 5,081,492 + +0.5 5,081,493 - +0.0 5,081,493 - -1.0 5,081,501 + -0.2 5,081,501 + -0.4 5,081,501 + -0.4 5,081,501 + -0.7 5,081,502 - -0.7 5,081,502 - +0.6 5,081,560 + -0.4 5,081,801 + Psyr_4264 0.23 -0.2 5,081,801 + Psyr_4264 0.23 +0.4 5,081,801 + Psyr_4264 0.23 +0.1 5,081,802 - Psyr_4264 0.23 -1.1 5,081,802 - Psyr_4264 0.23 -0.8 5,081,802 - Psyr_4264 0.23 -0.4 5,081,802 - Psyr_4264 0.23 -0.3 5,081,802 - Psyr_4264 0.23 -1.0 5,081,802 - Psyr_4264 0.23 -0.4 5,081,802 - Psyr_4264 0.23 -0.3 5,081,802 - Psyr_4264 0.23 -0.1 5,081,805 + Psyr_4264 0.23 -0.7 5,081,806 - Psyr_4264 0.23 -0.4 5,081,822 + Psyr_4264 0.24 -0.3 5,081,822 + Psyr_4264 0.24 +0.6 5,081,822 + Psyr_4264 0.24 -0.4 5,081,822 + Psyr_4264 0.24 -0.6 5,081,822 + Psyr_4264 0.24 -1.6 5,081,822 + Psyr_4264 0.24 +0.6 5,081,822 + Psyr_4264 0.24 -1.1 5,081,823 - Psyr_4264 0.24 -1.5 5,081,823 - Psyr_4264 0.24 -0.3 5,081,823 - Psyr_4264 0.24 -0.7 5,081,823 - Psyr_4264 0.24 +0.2 5,081,826 + Psyr_4264 0.25 +0.4 5,082,146 + Psyr_4264 0.44 +1.3 5,082,146 + Psyr_4264 0.44 -0.4 5,082,146 + Psyr_4264 0.44 +1.1 5,082,146 + Psyr_4264 0.44 +0.1 5,082,146 + Psyr_4264 0.44 +0.4 5,082,147 - Psyr_4264 0.44 -0.3 5,082,147 - Psyr_4264 0.44 -0.5 5,082,147 - Psyr_4264 0.44 -0.4 5,082,147 - Psyr_4264 0.44 +1.3 5,082,147 - Psyr_4264 0.44 +0.1 5,082,350 + Psyr_4264 0.56 -0.5 5,082,350 + Psyr_4264 0.56 -1.3 5,082,350 + Psyr_4264 0.56 -0.3 5,082,351 - Psyr_4264 0.56 -0.6 5,082,362 + Psyr_4264 0.57 -1.5 5,082,422 + Psyr_4264 0.60 -0.4 5,082,423 - Psyr_4264 0.60 -1.7 5,082,949 - +0.3 5,083,064 + +1.3 5,083,064 + +0.0 5,083,064 + -0.7 5,083,064 + -0.0 5,083,065 - -0.1 5,083,070 + -1.5 5,083,070 + -0.1 5,083,070 + -1.0 5,083,071 - +0.3 5,083,071 - -2.0 5,083,071 - -0.9 5,083,071 - -2.3 5,083,093 + -1.7 5,083,093 + -1.1 5,083,102 + -2.3 5,083,103 - -0.7 5,083,156 + +0.2 5,083,156 + +0.8 5,083,157 - -1.5 5,083,201 - -0.2 5,083,201 - -0.7 5,083,201 - +0.3 5,083,238 + -1.5 5,083,238 + -0.1 5,083,239 - +1.1 5,083,239 - -0.7 5,083,240 + +0.3 5,083,240 + +0.5 5,083,241 - +0.7 5,083,241 - -0.8 5,083,376 + -1.2 5,083,413 + -0.4 5,083,418 + -0.5 5,083,418 + -0.2 5,083,418 + +0.8 5,083,418 + -0.5 5,083,418 + -0.6 5,083,419 - +0.3 5,083,419 - +0.1 5,083,419 - +0.5 5,083,419 - -0.3 5,083,419 - +0.1 5,083,419 - -0.5 5,083,419 - -1.3 5,083,422 + +0.3 5,083,422 + +1.2 5,083,423 - +1.6 5,083,423 - +0.3 5,083,501 + +0.5 5,083,646 + -1.4 5,083,913 + Psyr_4265 0.12 -0.9 5,083,913 + Psyr_4265 0.12 -1.3 5,083,913 + Psyr_4265 0.12 +0.4 5,083,913 + Psyr_4265 0.12 +4.1 5,083,913 + Psyr_4265 0.12 -1.3 5,083,914 - Psyr_4265 0.12 +0.9 5,083,914 - Psyr_4265 0.12 -0.4 5,083,914 - Psyr_4265 0.12 +0.2 5,083,914 - Psyr_4265 0.12 +0.1 5,083,914 - Psyr_4265 0.12 -0.2 5,083,914 - Psyr_4265 0.12 +1.3 5,083,914 - Psyr_4265 0.12 +0.1 5,083,916 - Psyr_4265 0.12 +1.9 5,083,916 - Psyr_4265 0.12 -0.5 5,083,943 + Psyr_4265 0.13 -0.7 5,083,943 + Psyr_4265 0.13 +0.7 5,083,943 + Psyr_4265 0.13 +0.1 5,083,943 + Psyr_4265 0.13 +0.6 5,083,943 + Psyr_4265 0.13 +0.3 5,083,943 + Psyr_4265 0.13 +0.2 5,083,943 + Psyr_4265 0.13 +0.5 5,083,944 - Psyr_4265 0.13 +1.1 5,083,944 - Psyr_4265 0.13 -0.5 5,083,944 - Psyr_4265 0.13 -0.2 5,083,944 - Psyr_4265 0.13 +0.7 5,083,944 - Psyr_4265 0.13 -0.6 5,083,944 - Psyr_4265 0.13 -0.2 5,083,944 - Psyr_4265 0.13 -0.1 5,083,945 + Psyr_4265 0.13 +0.2 5,083,945 + Psyr_4265 0.13 +0.2 5,083,945 + Psyr_4265 0.13 +0.4 5,083,945 + Psyr_4265 0.13 +0.5 5,083,945 + Psyr_4265 0.13 -1.3 5,083,945 + Psyr_4265 0.13 -0.6 5,083,946 - Psyr_4265 0.13 -0.9 5,083,946 - Psyr_4265 0.13 +1.2 5,083,946 - Psyr_4265 0.13 -0.1 5,083,946 - Psyr_4265 0.13 -0.5 5,083,946 - Psyr_4265 0.13 +1.4 5,083,947 + Psyr_4265 0.13 -0.4 5,083,947 + Psyr_4265 0.13 -2.4 5,083,948 - Psyr_4265 0.13 +1.2 5,083,948 - Psyr_4265 0.13 -0.9 5,083,948 - Psyr_4265 0.13 +0.7 5,083,982 + Psyr_4265 0.14 +0.7
Or see this region's nucleotide sequence