Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3572 and Psyr_3573 are separated by 385 nucleotides Psyr_3573 and Psyr_3574 are separated by 110 nucleotides
Psyr_3572: Psyr_3572 - acetyl-coenzyme A synthetase, at 4,253,732 to 4,255,687
_3572
Psyr_3573: Psyr_3573 - conserved hypothetical protein, at 4,256,073 to 4,256,339
_3573
Psyr_3574: Psyr_3574 - Helix-turn-helix, Fis-type, at 4,256,450 to 4,258,027
_3574
Position (kb) 4256
4257 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4255.275 kb on + strand, within Psyr_3572 at 4255.275 kb on + strand, within Psyr_3572 at 4255.275 kb on + strand, within Psyr_3572 at 4255.275 kb on + strand, within Psyr_3572 at 4255.275 kb on + strand, within Psyr_3572 at 4255.276 kb on - strand, within Psyr_3572 at 4255.276 kb on - strand, within Psyr_3572 at 4255.276 kb on - strand, within Psyr_3572 at 4255.276 kb on - strand, within Psyr_3572 at 4255.276 kb on - strand, within Psyr_3572 at 4255.276 kb on - strand, within Psyr_3572 at 4255.276 kb on - strand, within Psyr_3572 at 4255.276 kb on - strand, within Psyr_3572 at 4255.453 kb on - strand, within Psyr_3572 at 4255.453 kb on - strand, within Psyr_3572 at 4255.453 kb on - strand, within Psyr_3572 at 4255.605 kb on + strand at 4255.605 kb on + strand at 4255.605 kb on + strand at 4255.605 kb on + strand at 4255.606 kb on - strand at 4255.606 kb on - strand at 4255.606 kb on - strand at 4255.606 kb on - strand at 4255.617 kb on + strand at 4255.617 kb on + strand at 4255.617 kb on + strand at 4255.617 kb on + strand at 4255.618 kb on - strand at 4255.618 kb on - strand at 4255.618 kb on - strand at 4255.695 kb on - strand at 4255.695 kb on - strand at 4255.718 kb on + strand at 4255.718 kb on + strand at 4255.767 kb on + strand at 4255.767 kb on + strand at 4255.870 kb on + strand at 4255.871 kb on - strand at 4255.871 kb on - strand at 4255.907 kb on + strand at 4255.907 kb on + strand at 4255.908 kb on - strand at 4255.908 kb on - strand at 4255.908 kb on - strand at 4255.908 kb on - strand at 4255.909 kb on + strand at 4255.909 kb on + strand at 4255.909 kb on + strand at 4255.909 kb on + strand at 4255.910 kb on - strand at 4255.910 kb on - strand at 4255.910 kb on - strand at 4255.910 kb on - strand at 4255.910 kb on - strand at 4255.910 kb on - strand at 4255.910 kb on - strand at 4255.910 kb on - strand at 4255.911 kb on + strand at 4255.911 kb on + strand at 4255.911 kb on + strand at 4255.911 kb on + strand at 4255.912 kb on - strand at 4255.912 kb on - strand at 4255.912 kb on - strand at 4255.932 kb on + strand at 4255.932 kb on + strand at 4256.002 kb on - strand at 4256.064 kb on + strand at 4256.084 kb on - strand at 4256.084 kb on - strand at 4256.084 kb on - strand at 4256.178 kb on + strand, within Psyr_3573 at 4256.178 kb on + strand, within Psyr_3573 at 4256.178 kb on + strand, within Psyr_3573 at 4256.179 kb on - strand, within Psyr_3573 at 4256.179 kb on - strand, within Psyr_3573 at 4256.179 kb on - strand, within Psyr_3573 at 4256.180 kb on + strand, within Psyr_3573 at 4256.180 kb on + strand, within Psyr_3573 at 4256.180 kb on + strand, within Psyr_3573 at 4256.181 kb on - strand, within Psyr_3573 at 4256.181 kb on - strand, within Psyr_3573 at 4256.181 kb on - strand, within Psyr_3573 at 4256.181 kb on - strand, within Psyr_3573 at 4256.184 kb on + strand, within Psyr_3573 at 4256.184 kb on + strand, within Psyr_3573 at 4256.268 kb on + strand, within Psyr_3573 at 4256.268 kb on + strand, within Psyr_3573 at 4256.269 kb on - strand, within Psyr_3573 at 4256.269 kb on - strand, within Psyr_3573 at 4256.269 kb on - strand, within Psyr_3573 at 4256.304 kb on + strand, within Psyr_3573 at 4256.396 kb on + strand at 4256.396 kb on + strand at 4256.396 kb on + strand at 4256.396 kb on + strand at 4256.396 kb on + strand at 4256.396 kb on + strand at 4256.396 kb on + strand at 4256.397 kb on - strand at 4256.397 kb on - strand at 4256.397 kb on - strand at 4256.397 kb on - strand at 4256.397 kb on - strand at 4256.397 kb on - strand at 4256.398 kb on + strand at 4256.398 kb on + strand at 4256.398 kb on + strand at 4256.398 kb on + strand at 4256.398 kb on + strand at 4256.398 kb on + strand at 4256.398 kb on + strand at 4256.398 kb on + strand at 4256.398 kb on + strand at 4256.399 kb on - strand at 4256.399 kb on - strand at 4256.399 kb on - strand at 4256.399 kb on - strand at 4256.399 kb on - strand at 4256.399 kb on - strand at 4256.399 kb on - strand at 4256.399 kb on - strand at 4256.399 kb on - strand at 4256.399 kb on - strand at 4256.399 kb on - strand at 4256.437 kb on - strand at 4256.451 kb on + strand at 4256.451 kb on + strand at 4256.493 kb on + strand at 4256.521 kb on + strand at 4256.521 kb on + strand at 4256.521 kb on + strand at 4256.522 kb on - strand at 4256.522 kb on - strand at 4256.546 kb on + strand at 4256.546 kb on + strand at 4256.615 kb on - strand, within Psyr_3574 at 4256.683 kb on + strand, within Psyr_3574 at 4256.735 kb on + strand, within Psyr_3574 at 4256.735 kb on + strand, within Psyr_3574 at 4256.736 kb on - strand, within Psyr_3574 at 4256.804 kb on + strand, within Psyr_3574 at 4256.900 kb on + strand, within Psyr_3574 at 4256.900 kb on + strand, within Psyr_3574 at 4256.900 kb on + strand, within Psyr_3574 at 4256.901 kb on - strand, within Psyr_3574 at 4256.901 kb on - strand, within Psyr_3574 at 4256.901 kb on - strand, within Psyr_3574 at 4256.902 kb on + strand, within Psyr_3574 at 4256.902 kb on + strand, within Psyr_3574 at 4256.902 kb on + strand, within Psyr_3574 at 4256.902 kb on + strand, within Psyr_3574 at 4256.902 kb on + strand, within Psyr_3574 at 4256.902 kb on + strand, within Psyr_3574 at 4256.903 kb on - strand, within Psyr_3574 at 4256.903 kb on - strand, within Psyr_3574 at 4256.932 kb on - strand, within Psyr_3574
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 4,255,275 + Psyr_3572 0.79 -0.5 4,255,275 + Psyr_3572 0.79 +0.4 4,255,275 + Psyr_3572 0.79 -0.5 4,255,275 + Psyr_3572 0.79 -0.4 4,255,275 + Psyr_3572 0.79 -1.9 4,255,276 - Psyr_3572 0.79 +0.6 4,255,276 - Psyr_3572 0.79 +2.6 4,255,276 - Psyr_3572 0.79 -1.0 4,255,276 - Psyr_3572 0.79 +1.3 4,255,276 - Psyr_3572 0.79 +0.4 4,255,276 - Psyr_3572 0.79 -0.8 4,255,276 - Psyr_3572 0.79 +0.7 4,255,276 - Psyr_3572 0.79 +1.1 4,255,453 - Psyr_3572 0.88 +0.5 4,255,453 - Psyr_3572 0.88 +1.0 4,255,453 - Psyr_3572 0.88 -0.3 4,255,605 + +0.1 4,255,605 + -1.0 4,255,605 + -0.0 4,255,605 + +0.7 4,255,606 - +0.7 4,255,606 - +0.5 4,255,606 - +1.9 4,255,606 - -1.0 4,255,617 + -1.1 4,255,617 + -0.7 4,255,617 + -0.1 4,255,617 + -0.8 4,255,618 - -0.0 4,255,618 - +0.5 4,255,618 - +0.2 4,255,695 - -1.0 4,255,695 - +0.1 4,255,718 + +0.6 4,255,718 + +1.2 4,255,767 + -0.6 4,255,767 + +0.3 4,255,870 + -2.3 4,255,871 - -1.5 4,255,871 - -0.7 4,255,907 + -1.3 4,255,907 + +1.5 4,255,908 - -0.0 4,255,908 - +2.1 4,255,908 - -0.1 4,255,908 - -0.1 4,255,909 + +0.1 4,255,909 + -1.0 4,255,909 + -2.1 4,255,909 + +0.6 4,255,910 - -0.1 4,255,910 - +1.0 4,255,910 - +0.1 4,255,910 - -1.0 4,255,910 - -0.1 4,255,910 - -0.2 4,255,910 - -0.6 4,255,910 - +1.2 4,255,911 + -1.2 4,255,911 + +0.2 4,255,911 + -0.0 4,255,911 + -1.7 4,255,912 - +0.2 4,255,912 - +0.7 4,255,912 - -0.8 4,255,932 + +1.3 4,255,932 + -0.7 4,256,002 - +2.4 4,256,064 + +1.1 4,256,084 - +0.5 4,256,084 - -1.7 4,256,084 - -0.1 4,256,178 + Psyr_3573 0.39 -0.2 4,256,178 + Psyr_3573 0.39 +1.2 4,256,178 + Psyr_3573 0.39 +0.5 4,256,179 - Psyr_3573 0.40 +1.0 4,256,179 - Psyr_3573 0.40 -0.6 4,256,179 - Psyr_3573 0.40 +1.1 4,256,180 + Psyr_3573 0.40 -0.7 4,256,180 + Psyr_3573 0.40 -1.1 4,256,180 + Psyr_3573 0.40 +0.3 4,256,181 - Psyr_3573 0.40 -0.8 4,256,181 - Psyr_3573 0.40 -1.7 4,256,181 - Psyr_3573 0.40 +0.6 4,256,181 - Psyr_3573 0.40 -1.7 4,256,184 + Psyr_3573 0.42 +1.6 4,256,184 + Psyr_3573 0.42 -0.5 4,256,268 + Psyr_3573 0.73 -0.3 4,256,268 + Psyr_3573 0.73 -0.1 4,256,269 - Psyr_3573 0.73 -1.8 4,256,269 - Psyr_3573 0.73 -0.3 4,256,269 - Psyr_3573 0.73 +0.4 4,256,304 + Psyr_3573 0.87 -0.9 4,256,396 + +1.9 4,256,396 + -0.0 4,256,396 + -0.3 4,256,396 + -0.2 4,256,396 + -0.1 4,256,396 + +0.1 4,256,396 + -0.2 4,256,397 - +0.1 4,256,397 - +0.1 4,256,397 - +1.2 4,256,397 - -0.0 4,256,397 - +0.6 4,256,397 - -1.5 4,256,398 + -1.1 4,256,398 + -1.8 4,256,398 + -0.3 4,256,398 + -0.5 4,256,398 + -2.0 4,256,398 + -0.5 4,256,398 + -1.6 4,256,398 + -0.8 4,256,398 + -0.2 4,256,399 - -0.6 4,256,399 - -0.9 4,256,399 - -1.3 4,256,399 - +1.0 4,256,399 - -0.6 4,256,399 - -0.6 4,256,399 - -0.1 4,256,399 - +0.3 4,256,399 - -0.3 4,256,399 - -0.3 4,256,399 - -1.3 4,256,437 - +2.8 4,256,451 + -0.8 4,256,451 + -0.4 4,256,493 + -0.0 4,256,521 + +0.5 4,256,521 + -1.6 4,256,521 + -0.7 4,256,522 - +1.2 4,256,522 - +1.1 4,256,546 + +0.4 4,256,546 + +0.2 4,256,615 - Psyr_3574 0.10 +0.6 4,256,683 + Psyr_3574 0.15 -1.0 4,256,735 + Psyr_3574 0.18 +2.0 4,256,735 + Psyr_3574 0.18 -1.6 4,256,736 - Psyr_3574 0.18 -1.3 4,256,804 + Psyr_3574 0.22 -1.2 4,256,900 + Psyr_3574 0.29 +1.7 4,256,900 + Psyr_3574 0.29 -0.0 4,256,900 + Psyr_3574 0.29 -0.8 4,256,901 - Psyr_3574 0.29 +0.7 4,256,901 - Psyr_3574 0.29 +1.7 4,256,901 - Psyr_3574 0.29 +1.6 4,256,902 + Psyr_3574 0.29 +0.5 4,256,902 + Psyr_3574 0.29 -2.9 4,256,902 + Psyr_3574 0.29 -1.1 4,256,902 + Psyr_3574 0.29 -0.5 4,256,902 + Psyr_3574 0.29 +1.0 4,256,902 + Psyr_3574 0.29 -1.0 4,256,903 - Psyr_3574 0.29 +1.5 4,256,903 - Psyr_3574 0.29 -0.2 4,256,932 - Psyr_3574 0.31 -0.3
Or see this region's nucleotide sequence