Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2877
Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | KB with Quercetin 360 ug/ml |
---|---|---|---|---|---|
remove | |||||
3,451,022 | - | Psyr_2876 | 0.45 | -0.2 | |
3,451,058 | + | Psyr_2876 | 0.47 | +0.8 | |
3,451,128 | - | Psyr_2876 | 0.51 | +0.7 | |
3,451,128 | - | Psyr_2876 | 0.51 | +1.4 | |
3,451,265 | + | Psyr_2876 | 0.60 | +0.4 | |
3,451,266 | - | Psyr_2876 | 0.60 | +1.0 | |
3,451,266 | - | Psyr_2876 | 0.60 | +2.0 | |
3,451,278 | - | Psyr_2876 | 0.61 | +1.0 | |
3,451,278 | - | Psyr_2876 | 0.61 | +1.8 | |
3,451,278 | - | Psyr_2876 | 0.61 | +0.6 | |
3,451,418 | - | Psyr_2876 | 0.70 | +1.0 | |
3,451,450 | + | Psyr_2876 | 0.72 | +0.6 | |
3,451,481 | + | Psyr_2876 | 0.74 | +0.3 | |
3,451,482 | - | Psyr_2876 | 0.74 | +0.1 | |
3,451,915 | - | -0.7 | |||
3,452,135 | + | Psyr_2877 | 0.22 | +0.7 | |
3,452,135 | + | Psyr_2877 | 0.22 | +0.4 | |
3,452,136 | - | Psyr_2877 | 0.23 | -0.8 | |
3,452,136 | - | Psyr_2877 | 0.23 | +0.2 | |
3,452,238 | - | Psyr_2877 | 0.33 | +0.6 | |
3,452,485 | - | Psyr_2877 | 0.57 | +2.4 | |
3,452,485 | - | Psyr_2877 | 0.57 | +0.5 | |
3,452,485 | - | Psyr_2877 | 0.57 | -0.3 | |
3,452,741 | + | Psyr_2877 | 0.83 | +0.2 | |
3,453,347 | - | Psyr_2878 | 0.12 | -0.7 | |
3,453,836 | - | Psyr_2878 | 0.42 | +0.5 | |
3,453,893 | + | Psyr_2878 | 0.45 | -1.4 | |
3,453,894 | - | Psyr_2878 | 0.45 | -0.5 |
Or see this region's nucleotide sequence