Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2877

Experiment: KB with Quercetin 360 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2876 and Psyr_2877 are separated by 15 nucleotidesPsyr_2877 and Psyr_2878 are separated by 244 nucleotides Psyr_2876: Psyr_2876 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 3,450,322 to 3,451,893 _2876 Psyr_2877: Psyr_2877 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 3,451,909 to 3,452,913 _2877 Psyr_2878: Psyr_2878 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 3,453,158 to 3,454,786 _2878 Position (kb) 3451 3452 3453Strain fitness (log2 ratio) -1 0 1 2at 3451.022 kb on - strand, within Psyr_2876at 3451.058 kb on + strand, within Psyr_2876at 3451.128 kb on - strand, within Psyr_2876at 3451.128 kb on - strand, within Psyr_2876at 3451.265 kb on + strand, within Psyr_2876at 3451.266 kb on - strand, within Psyr_2876at 3451.266 kb on - strand, within Psyr_2876at 3451.278 kb on - strand, within Psyr_2876at 3451.278 kb on - strand, within Psyr_2876at 3451.278 kb on - strand, within Psyr_2876at 3451.418 kb on - strand, within Psyr_2876at 3451.450 kb on + strand, within Psyr_2876at 3451.481 kb on + strand, within Psyr_2876at 3451.482 kb on - strand, within Psyr_2876at 3451.915 kb on - strandat 3452.135 kb on + strand, within Psyr_2877at 3452.135 kb on + strand, within Psyr_2877at 3452.136 kb on - strand, within Psyr_2877at 3452.136 kb on - strand, within Psyr_2877at 3452.238 kb on - strand, within Psyr_2877at 3452.485 kb on - strand, within Psyr_2877at 3452.485 kb on - strand, within Psyr_2877at 3452.485 kb on - strand, within Psyr_2877at 3452.741 kb on + strand, within Psyr_2877at 3453.347 kb on - strand, within Psyr_2878at 3453.836 kb on - strand, within Psyr_2878at 3453.893 kb on + strand, within Psyr_2878at 3453.894 kb on - strand, within Psyr_2878

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml
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3,451,022 - Psyr_2876 0.45 -0.2
3,451,058 + Psyr_2876 0.47 +0.8
3,451,128 - Psyr_2876 0.51 +0.7
3,451,128 - Psyr_2876 0.51 +1.4
3,451,265 + Psyr_2876 0.60 +0.4
3,451,266 - Psyr_2876 0.60 +1.0
3,451,266 - Psyr_2876 0.60 +2.0
3,451,278 - Psyr_2876 0.61 +1.0
3,451,278 - Psyr_2876 0.61 +1.8
3,451,278 - Psyr_2876 0.61 +0.6
3,451,418 - Psyr_2876 0.70 +1.0
3,451,450 + Psyr_2876 0.72 +0.6
3,451,481 + Psyr_2876 0.74 +0.3
3,451,482 - Psyr_2876 0.74 +0.1
3,451,915 - -0.7
3,452,135 + Psyr_2877 0.22 +0.7
3,452,135 + Psyr_2877 0.22 +0.4
3,452,136 - Psyr_2877 0.23 -0.8
3,452,136 - Psyr_2877 0.23 +0.2
3,452,238 - Psyr_2877 0.33 +0.6
3,452,485 - Psyr_2877 0.57 +2.4
3,452,485 - Psyr_2877 0.57 +0.5
3,452,485 - Psyr_2877 0.57 -0.3
3,452,741 + Psyr_2877 0.83 +0.2
3,453,347 - Psyr_2878 0.12 -0.7
3,453,836 - Psyr_2878 0.42 +0.5
3,453,893 + Psyr_2878 0.45 -1.4
3,453,894 - Psyr_2878 0.45 -0.5

Or see this region's nucleotide sequence